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3TF6
Biol. Unit 1
Info
Asym.Unit (184 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (62 KB)
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Title
:
CRYSTAL STRUCTURE OF NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN (C87S MUTANT) IN COMPLEX WITH EUROPIUM AND THE SIDEROPHORE ANALOG TREN(CAM)(1,2-HOPO)2
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
15 Aug 11 (Deposition) - 07 Sep 11 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Antimicrobial Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Correnti, V. Richardson, A. K. Sia, A. D. Bandaranayake, M. Ruiz, Y. Suryo Rahmanto, Z. Kovacevic, M. C. Clifton, M. A. Holmes, B. K. Kaiser, J. Barasch, K. N. Raymond, D. R. Richardson, R. K. Strong
Siderocalin/Lcn2/Ngal/24P3 Does Not Drive Apoptosis Through Gentisic Acid Mediated Iron Withdrawal In Hematopoietic Cel Lines.
Plos One V. 7 43696 2012
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: 2,3-DIHYDROXY-BENZOIC ACID (DBHa)
2b: 2,3-DIHYDROXY-BENZOIC ACID (DBHb)
2c: 2,3-DIHYDROXY-BENZOIC ACID (DBHc)
3a: EUROPIUM ION (EUa)
3b: EUROPIUM ION (EUb)
3c: EUROPIUM ION (EUc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DBH
1
Ligand/Ion
2,3-DIHYDROXY-BENZOIC ACID
3
EU
-1
Ligand/Ion
EUROPIUM ION
4
GOL
1
Ligand/Ion
GLYCEROL
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC8 (SOFTWARE)
6: BC4 (SOFTWARE)
7: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:42 , ASN A:164 , HIS A:165 , LYS C:75
BINDING SITE FOR RESIDUE GOL A 201
2
AC2
SOFTWARE
DBH A:216
BINDING SITE FOR RESIDUE EU A 206
3
AC3
SOFTWARE
TYR A:106 , PHE A:123 , LYS A:125 , TYR A:132 , LYS A:134 , HOH A:189 , EU A:206
BINDING SITE FOR RESIDUE DBH A 216
4
AC4
SOFTWARE
TYR A:52 , THR A:54 , SER A:68 , ARG A:81 , PHE A:123 , LYS A:134 , THR A:136 , TYR A:138
BINDING SITE FOR RESIDUE SO4 A 221
5
AC8
SOFTWARE
LYS A:75 , LEU C:42 , ASN C:164 , HIS C:165
BINDING SITE FOR RESIDUE GOL C 201
6
BC4
SOFTWARE
GLN A:117 , ASN C:114 , HIS C:118 , HOH C:232
BINDING SITE FOR RESIDUE GOL C 184
7
BC6
SOFTWARE
SER A:146
BINDING SITE FOR RESIDUE CL A 183
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (A:21-34)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
NGAL_HUMAN
41-54
1
A:21-34
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3tf6a_ (A:)
1b: SCOP_d3tf6b_ (B:)
1c: SCOP_d3tf6c_ (C:)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
Neutrophil gelatinase-associated lipocalin (NGAL)
(28)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d3tf6a_
A:
1b
d3tf6b_
B:
1c
d3tf6c_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (184 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
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