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3TF4
Asym. Unit
Info
Asym.Unit (229 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
ENDO/EXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
Authors
:
J. Sakon, D. B. Wilson, P. A. Karplus
Date
:
30 May 97 (Deposition) - 04 Sep 97 (Release) - 08 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycosyl Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Sakon, D. Irwin, D. B. Wilson, P. A. Karplus
Structure And Mechanism Of Endo/Exocellulase E4 From Thermomonospora Fusca.
Nat. Struct. Biol. V. 4 810 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
8
Ligand/Ion
BETA-D-GLUCOSE
2
CA
4
Ligand/Ion
CALCIUM ION
[
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]
Sites
(18, 18)
Info
All Sites
01: AA1 (UNKNOWN)
02: AB1 (UNKNOWN)
03: AC1 (SOFTWARE)
04: AC2 (SOFTWARE)
05: AC3 (SOFTWARE)
06: AC4 (SOFTWARE)
07: AC5 (SOFTWARE)
08: AC6 (SOFTWARE)
09: AC7 (SOFTWARE)
10: AC8 (SOFTWARE)
11: AC9 (SOFTWARE)
12: BC1 (SOFTWARE)
13: BC2 (SOFTWARE)
14: BC3 (SOFTWARE)
15: CA1 (UNKNOWN)
16: CA2 (UNKNOWN)
17: CA3 (UNKNOWN)
18: CA4 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AA1
UNKNOWN
ASP A:55 , ASP A:58 , GLU A:424
ACTIVE SITE.
02
AB1
UNKNOWN
ASP B:55 , ASP B:58 , GLU B:424
ACTIVE SITE.
03
AC1
SOFTWARE
TRP A:256 , ASP A:261 , ASP A:262 , BGC A:6002 , HOH A:6343
BINDING SITE FOR RESIDUE BGC A 6001
04
AC2
SOFTWARE
TRP A:256 , TYR A:318 , BGC A:6001 , BGC A:6003 , HOH A:6368
BINDING SITE FOR RESIDUE BGC A 6002
05
AC3
SOFTWARE
PHE A:205 , TRP A:260 , TRP A:313 , ARG A:317 , TYR A:318 , BGC A:6002 , HOH A:6045 , HOH A:6109 , HOH A:6150 , HOH A:6469
BINDING SITE FOR RESIDUE BGC A 6003
06
AC4
SOFTWARE
HIS A:376 , ARG A:378 , GLU A:424 , HOH A:6270 , HOH A:6449
BINDING SITE FOR RESIDUE BGC A 6005
07
AC5
SOFTWARE
SER A:210 , GLY A:211 , ASP A:214 , GLU A:215 , ASP A:261
BINDING SITE FOR RESIDUE CA A 3001
08
AC6
SOFTWARE
THR A:504 , ASP A:506 , ASP A:571 , ASN A:574 , ASP A:575 , HOH A:6043
BINDING SITE FOR RESIDUE CA A 3002
09
AC7
SOFTWARE
TRP B:256 , ASP B:261 , ASP B:262 , BGC B:6012 , HOH B:6258 , HOH B:6320 , HOH B:6470
BINDING SITE FOR RESIDUE BGC B 6011
10
AC8
SOFTWARE
TRP B:256 , TRP B:260 , TYR B:318 , BGC B:6011 , BGC B:6013 , HOH B:6320 , HOH B:6700
BINDING SITE FOR RESIDUE BGC B 6012
11
AC9
SOFTWARE
PHE B:205 , TRP B:260 , ARG B:317 , TYR B:318 , BGC B:6012 , HOH B:6118 , HOH B:6172 , HOH B:6255
BINDING SITE FOR RESIDUE BGC B 6013
12
BC1
SOFTWARE
HIS B:376 , ARG B:378 , GLU B:424 , HOH B:6216
BINDING SITE FOR RESIDUE BGC B 6015
13
BC2
SOFTWARE
SER B:210 , GLY B:211 , ASP B:214 , GLU B:215 , ASP B:261 , HOH B:6017
BINDING SITE FOR RESIDUE CA B 3003
14
BC3
SOFTWARE
THR B:504 , ASP B:506 , ASP B:571 , ASN B:574 , ASP B:575 , HOH B:6138
BINDING SITE FOR RESIDUE CA B 3004
15
CA1
UNKNOWN
SER A:210 , GLY A:211 , ASP A:214 , GLU A:215 , ASP A:261
CA BINDING SITE.
16
CA2
UNKNOWN
SER B:210 , GLY B:211 , ASP B:214 , GLU B:215 , ASP B:261
CA BINDING SITE.
17
CA3
UNKNOWN
THR A:504 , ASP A:506 , ASP A:571 , ASN A:574 , ASP A:575
CA BINDING SITE.
18
CA4
UNKNOWN
THR B:504 , ASP B:506 , ASP B:571 , ASN B:574 , ASP B:575
CA BINDING SITE.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F9_1 (A:362-378,B:362-378)
2: GLYCOSYL_HYDROL_F9_2 (A:413-431,B:413-431)
3: CBM3 (A:458-605,B:458-605)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F9_1
PS00592
Glycosyl hydrolases family 9 active sites signature 1.
GUN4_THEFU
408-424
2
A:362-378
B:362-378
2
GLYCOSYL_HYDROL_F9_2
PS00698
Glycosyl hydrolases family 9 active sites signature 2.
GUN4_THEFU
459-477
2
A:413-431
B:413-431
3
CBM3
PS51172
CBM3 (carbohydrate binding type-3) domain profile.
GUN4_THEFU
504-652
2
A:458-605
B:458-605
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3tf4a1 (A:1-460)
1b: SCOP_d3tf4b1 (B:1-460)
2a: SCOP_d3tf4a2 (A:461-605)
2b: SCOP_d3tf4b2 (B:461-605)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Cellulases catalytic domain
(51)
Protein domain
:
Endo/exocellulase:cellobiose E-4, N-terminal domain
(8)
Thermobifida fusca [TaxId: 2021]
(4)
1a
d3tf4a1
A:1-460
1b
d3tf4b1
B:1-460
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Endo/exocellulase:cellobiose E-4, C-terminal domain
(8)
Thermobifida fusca [TaxId: 2021]
(4)
2a
d3tf4a2
A:461-605
2b
d3tf4b2
B:461-605
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3tf4A01 (A:1-454)
1b: CATH_3tf4B01 (B:1-454)
2a: CATH_3tf4A02 (A:458-604)
2b: CATH_3tf4B02 (B:458-604)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.10, no name defined]
(67)
Thermobifida fusca. Organism_taxid: 2021.
(4)
1a
3tf4A01
A:1-454
1b
3tf4B01
B:1-454
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.710, no name defined]
(10)
Thermobifida fusca. Organism_taxid: 2021.
(4)
2a
3tf4A02
A:458-604
2b
3tf4B02
B:458-604
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_9_3tf4B01 (B:5-438)
1b: PFAM_Glyco_hydro_9_3tf4B02 (B:5-438)
2a: PFAM_CBM_3_3tf4B03 (B:463-542)
2b: PFAM_CBM_3_3tf4B04 (B:463-542)
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Clans
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Families
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Organisms
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)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Glyco_hydro_9
(11)
Thermomonospora fusca
(3)
1a
Glyco_hydro_9-3tf4B01
B:5-438
1b
Glyco_hydro_9-3tf4B02
B:5-438
Clan
:
CBD
(21)
Family
:
CBM_3
(10)
Thermomonospora fusca
(3)
2a
CBM_3-3tf4B03
B:463-542
2b
CBM_3-3tf4B04
B:463-542
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