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3TBL
Asym. Unit
Info
Asym.Unit (308 KB)
Biol.Unit 1 (303 KB)
Biol.Unit 2 (602 KB)
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(1)
Title
:
STRUCTURE OF MONO-UBIQUITINATED PCNA: IMPLICATIONS FOR DNA POLYMERASE SWITCHING AND OKAZAKI FRAGMENT MATURATION
Authors
:
Z. Zhang, M. Lee, E. Lee, S. Zhang
Date
:
07 Aug 11 (Deposition) - 23 May 12 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: A,B,C,D,E (2x)
Keywords
:
Pcna, Ubiquitin, Translesion Synthesis, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, S. Zhang, S. H. Lin, X. Wang, L. Wu, E. Y. Lee, M. Y. Lee
Structure Of Monoubiquitinated Pcna: Implications For Dna Polymerase Switching And Okazaki Fragment Maturation.
Cell Cycle V. 11 2128 2012
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071871 (S228I, chain A/B/C, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071871
S
228
I
PCNA_HUMAN
Disease (ATLD2)
---
A/B/C
S
228
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 8)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_1 (D:27-52,E:27-52)
2: PCNA_1 (A:34-57,B:34-57,C:34-57)
3: PCNA_2 (A:61-79,B:61-79,C:61-79)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_HUMAN
27-52
2
D:27-52
E:27-52
2
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_HUMAN
34-57
3
A:34-57
B:34-57
C:34-57
3
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_HUMAN
61-79
3
A:61-79
B:61-79
C:61-79
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Exons
(10, 26)
Info
All Exons
Exon 1.2j (D:3-16 | E:3-16)
Exon 1.2m (D:17-35 | E:17-35)
Exon 1.3a (D:35-63 | E:35-63)
Exon 1.3g (D:64-74 | E:64-74)
Exon 2.2b (A:1-74 | B:1-74 | C:1-74)
Exon 2.3 (A:74-107 | B:74-107 | C:74-107)
Exon 2.4 (A:107-129 | B:107-129 | C:107-129)
Exon 2.5 (A:130-194 (gaps) | B:130-194 (gaps...)
Exon 2.6 (A:195-236 | B:195-236 | C:195-236)
Exon 2.7 (A:236-256 | B:236-256 | C:236-258)
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All Exon Boundaries
01: Boundary 1.2a/1.2j
02: Boundary 1.2j/1.2m
03: Boundary 1.2m/1.3a
04: Boundary 1.3a/1.3g
05: Boundary 1.3g/1.4d
06: Boundary 2.1/2.2b
07: Boundary 2.2b/2.3
08: Boundary 2.3/2.4
09: Boundary 2.4/2.5
10: Boundary 2.5/2.6
11: Boundary 2.6/2.7
12: Boundary 2.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000272317
2a
ENSE00001409728
chr2:
55459538-55459844
307
RS27A_HUMAN
-
0
0
-
-
1.2j
ENST00000272317
2j
ENSE00002192701
chr2:
55459944-55460008
65
RS27A_HUMAN
1-16
16
2
D:3-16
E:3-16
14
14
1.2m
ENST00000272317
2m
ENSE00001421738
chr2:
55460499-55460553
55
RS27A_HUMAN
17-35
19
2
D:17-35
E:17-35
19
19
1.3a
ENST00000272317
3a
ENSE00001413170
chr2:
55461255-55461340
86
RS27A_HUMAN
35-63
29
2
D:35-63
E:35-63
29
29
1.3g
ENST00000272317
3g
ENSE00001035837
chr2:
55461967-55462098
132
RS27A_HUMAN
64-107
44
2
D:64-74
E:64-74
11
11
1.4d
ENST00000272317
4d
ENSE00001911348
chr2:
55462564-55462989
426
RS27A_HUMAN
108-156
49
0
-
-
2.1
ENST00000379160
1
ENSE00001480155
chr20:
5107272-5107146
127
PCNA_HUMAN
-
0
0
-
-
2.2b
ENST00000379160
2b
ENSE00001480145
chr20:
5100560-5100224
337
PCNA_HUMAN
1-74
74
3
A:1-74
B:1-74
C:1-74
74
74
74
2.3
ENST00000379160
3
ENSE00001747465
chr20:
5099512-5099415
98
PCNA_HUMAN
74-107
34
3
A:74-107
B:74-107
C:74-107
34
34
34
2.4
ENST00000379160
4
ENSE00001693283
chr20:
5099323-5099256
68
PCNA_HUMAN
107-129
23
3
A:107-129
B:107-129
C:107-129
23
23
23
2.5
ENST00000379160
5
ENSE00000906721
chr20:
5098310-5098116
195
PCNA_HUMAN
130-194
65
3
A:130-194 (gaps)
B:130-194 (gaps)
C:130-194 (gaps)
65
65
65
2.6
ENST00000379160
6
ENSE00000906720
chr20:
5096218-5096095
124
PCNA_HUMAN
195-236
42
3
A:195-236
B:195-236
C:195-236
42
42
42
2.7
ENST00000379160
7
ENSE00000906719
chr20:
5096008-5095599
410
PCNA_HUMAN
236-261
26
3
A:236-256
B:236-256
C:236-258
21
21
23
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3tbld_ (D:)
1b: SCOP_d3tble_ (E:)
2a: SCOP_d3tbla1 (A:1-126)
2b: SCOP_d3tbla2 (A:127-256)
2c: SCOP_d3tblb1 (B:1-126)
2d: SCOP_d3tblb2 (B:127-256)
2e: SCOP_d3tblc1 (C:1-126)
2f: SCOP_d3tblc2 (C:127-258)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d3tbld_
D:
1b
d3tble_
E:
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
Proliferating cell nuclear antigen (PCNA)
(24)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d3tbla1
A:1-126
2b
d3tbla2
A:127-256
2c
d3tblb1
B:1-126
2d
d3tblb2
B:127-256
2e
d3tblc1
C:1-126
2f
d3tblc2
C:127-258
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (308 KB)
Header - Asym.Unit
Biol.Unit 1 (303 KB)
Header - Biol.Unit 1
Biol.Unit 2 (602 KB)
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