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3TB9
Asym. Unit
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Asym.Unit (114 KB)
Biol.Unit 1 (212 KB)
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(1)
Title
:
STRUCTURE OF YEAST RIBONUCLEOTIDE REDUCTASE 1 Q288A WITH AMPPNP AND CDP
Authors
:
M. F. Ahmad, P. S. Kaushal, Q. Wan, S. R. Wijeratna, M. Huang, C. D. Dealwi
Date
:
05 Aug 11 (Deposition) - 04 Apr 12 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Eukaryotic, Ribonucleotide Reductase, Dntp Regulation, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. F. Ahmad, P. S. Kaushal, Q. Wan, S. R. Wijerathna, X. An, M. Huang, C. G. Dealwis
Role Of Arginine 293 And Glutamine 288 In Communication Between Catalytic And Allosteric Sites In Yeast Ribonucleotide Reductase.
J. Mol. Biol. V. 419 315 2012
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2a: CYTIDINE-5'-DIPHOSPHATE (CDPa)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
CDP
1
Ligand/Ion
CYTIDINE-5'-DIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:201 , SER A:202 , SER A:217 , CYS A:218 , GLY A:246 , GLY A:247 , ASN A:426 , LEU A:427 , CYS A:428 , GLU A:430 , LEU A:445 , MET A:606 , PRO A:607 , THR A:608 , ALA A:609 , SER A:610 , THR A:611 , HOH A:989 , HOH A:999
BINDING SITE FOR RESIDUE CDP A 889
2
AC2
SOFTWARE
ASP A:226 , SER A:227 , ILE A:228 , ILE A:231 , LYS A:243 , ARG A:256 , ILE A:262 , ALA A:263 , TYR A:285 , VAL A:286 , ASP A:287 , MG A:891 , HOH A:990 , HOH A:994 , HOH A:996
BINDING SITE FOR RESIDUE ANP A 890
3
AC3
SOFTWARE
ANP A:890
BINDING SITE FOR RESIDUE MG A 891
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBORED_LARGE (A:585-607)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBORED_LARGE
PS00089
Ribonucleotide reductase large subunit signature.
RIR1_YEAST
585-607
1
A:585-607
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:89-746 (gaps))
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YER070W
1
YER070W.1
V:298948-301614
2667
RIR1_YEAST
1-888
888
1
A:89-746 (gaps)
658
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SCOP Domains
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Chain A
Asymmetric Unit 1
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