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3TB2
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
1-CYS PEROXIDOXIN FROM PLASMODIUM YOELLI
Authors
:
W. Qiu, J. D. Artz, M. Vedadi, S. Sharma, S. Houston, J. Lew, G. Wasney, M. X. Xu, J. Bray, M. Sundstrom, C. Arrowsmith, A. Edwards, R. Hui, A. Boch Structural Genomics Consortium (Sgc)
Date
:
04 Aug 11 (Deposition) - 19 Oct 11 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc, Unknown Function, Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vedadi, J. Lew, J. D. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
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Hetero Components
(4, 34)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
1c: 3-SULFINOALANINE (CSDc)
1d: 3-SULFINOALANINE (CSDd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
4
Mod. Amino Acid
3-SULFINOALANINE
2
EDO
21
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
4
Ligand/Ion
GLYCEROL
4
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:92 , ASN A:93 , LYS A:94 , HOH A:268 , HOH A:506 , LYS C:94
BINDING SITE FOR RESIDUE SO4 A 221
02
AC2
SOFTWARE
LYS A:212 , LYS A:213 , LYS D:15
BINDING SITE FOR RESIDUE SO4 A 222
03
AC3
SOFTWARE
PRO A:40 , PRO A:45 , VAL A:46 , CSD A:47 , GLU A:118 , ARG A:129 , ALA A:148 , HOH A:558 , ALA C:173 , ILE C:187 , PRO C:188
BINDING SITE FOR RESIDUE GOL A 223
04
AC4
SOFTWARE
ASN A:153 , HIS A:155 , ASN C:177 , ASN C:179
BINDING SITE FOR RESIDUE EDO A 224
05
AC5
SOFTWARE
LEU A:111 , THR A:143 , HIS C:4
BINDING SITE FOR RESIDUE EDO A 225
06
AC6
SOFTWARE
ASN A:11 , PHE A:12 , THR A:13 , HOH A:562
BINDING SITE FOR RESIDUE EDO A 226
07
AC7
SOFTWARE
ILE A:121 , GLY A:123 , SER B:104
BINDING SITE FOR RESIDUE EDO A 227
08
AC8
SOFTWARE
GLU A:207 , PRO A:209 , TYR C:88
BINDING SITE FOR RESIDUE EDO A 228
09
AC9
SOFTWARE
TYR A:89 , LYS A:91
BINDING SITE FOR RESIDUE EDO A 229
10
BC1
SOFTWARE
LYS B:212 , LYS B:213 , LYS C:15
BINDING SITE FOR RESIDUE SO4 B 221
11
BC2
SOFTWARE
PRO B:40 , THR B:44 , PRO B:45 , VAL B:46 , CSD B:47 , ARG B:129 , ALA B:148 , HOH B:554 , ALA D:173 , ILE D:187 , PRO D:188
BINDING SITE FOR RESIDUE GOL B 222
12
BC3
SOFTWARE
GLU B:207 , MET B:208 , PRO B:209 , TYR D:88
BINDING SITE FOR RESIDUE EDO B 223
13
BC4
SOFTWARE
ASN B:153 , HIS B:155 , GLU B:156 , HOH B:651 , ASN D:153 , EDO D:226 , EDO D:227
BINDING SITE FOR RESIDUE EDO B 224
14
BC5
SOFTWARE
TYR B:168
BINDING SITE FOR RESIDUE EDO B 225
15
BC6
SOFTWARE
LYS C:212 , LYS C:213 , HOH C:437
BINDING SITE FOR RESIDUE SO4 C 221
16
BC7
SOFTWARE
ALA A:173 , PRO A:188 , THR C:44 , PRO C:45 , VAL C:46 , CSD C:47 , ARG C:129 , ALA C:148 , HOH C:555
BINDING SITE FOR RESIDUE GOL C 222
17
BC8
SOFTWARE
TYR A:146 , GLU A:156 , LEU C:131 , TYR C:146 , ARG C:152 , ASN C:153 , GLU C:156 , HOH C:231
BINDING SITE FOR RESIDUE EDO C 223
18
BC9
SOFTWARE
ASN A:177 , ASN A:179 , ASN C:153 , HIS C:155
BINDING SITE FOR RESIDUE EDO C 224
19
CC1
SOFTWARE
TYR A:88 , GLU C:207 , MET C:208 , PRO C:209
BINDING SITE FOR RESIDUE EDO C 225
20
CC2
SOFTWARE
THR C:167 , TYR C:168 , THR C:169 , THR C:170 , PRO C:171
BINDING SITE FOR RESIDUE EDO C 226
21
CC3
SOFTWARE
PHE C:23 , GLU C:24 , TYR C:28
BINDING SITE FOR RESIDUE EDO C 227
22
CC4
SOFTWARE
ASP C:182 , LYS C:183
BINDING SITE FOR RESIDUE EDO C 228
23
CC5
SOFTWARE
LYS D:212 , LYS D:213
BINDING SITE FOR RESIDUE SO4 D 221
24
CC6
SOFTWARE
ALA B:173 , ILE B:187 , PRO B:188 , PRO D:40 , THR D:44 , PRO D:45 , VAL D:46 , CSD D:47 , GLU D:118 , ARG D:129 , ALA D:148 , HOH D:553
BINDING SITE FOR RESIDUE GOL D 222
25
CC7
SOFTWARE
TYR B:88 , GLU D:207 , MET D:208 , PRO D:209
BINDING SITE FOR RESIDUE EDO D 223
26
CC8
SOFTWARE
THR D:122 , EDO D:225
BINDING SITE FOR RESIDUE EDO D 224
27
CC9
SOFTWARE
SER C:104 , GLY D:123 , EDO D:224
BINDING SITE FOR RESIDUE EDO D 225
28
DC1
SOFTWARE
ASN B:177 , ASN B:179 , EDO B:224 , ASN D:153 , HIS D:155
BINDING SITE FOR RESIDUE EDO D 226
29
DC2
SOFTWARE
ASN B:153 , HIS B:155 , EDO B:224 , ARG D:159 , ASN D:177 , ASN D:179
BINDING SITE FOR RESIDUE EDO D 227
30
DC3
SOFTWARE
THR D:167 , THR D:169 , THR D:170 , PRO D:171
BINDING SITE FOR RESIDUE EDO D 228
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3tb2a_ (A:)
1b: SCOP_d3tb2b_ (B:)
1c: SCOP_d3tb2c_ (C:)
1d: SCOP_d3tb2d_ (D:)
View:
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Classes
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
1-Cys peroxiredoxin
(4)
Plasmodium yoelii yoelii [TaxId: 73239]
(2)
1a
d3tb2a_
A:
1b
d3tb2b_
B:
1c
d3tb2c_
C:
1d
d3tb2d_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
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all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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