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3TAY
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PORCINE ROTAVIRUS CRW-8 VP8* IN COMPLEX WITH N-GLYCOLYLNEURAMINIC ACID
Authors
:
X. Yu, H. Blanchard
Date
:
04 Aug 11 (Deposition) - 17 Oct 12 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Sandwich, Lectin, Sugar Binding Protein, Viral Protein, Neu5Gc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Yu, V. T. Dang, F. E. Fleming, M. Von Itzstein, B. S. Coulson, H. Blanchard
Structural Basis Of Rotavirus Strain Preference Toward N-Acetyl- Or N-Glycolylneuraminic Acid-Containing Receptors
J. Virol. V. 86 13456 2012
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Hetero Components
(6, 12)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: METHYL 3,5-DIDEOXY-5-[(HYDROXYACET... (MN0a)
3b: METHYL 3,5-DIDEOXY-5-[(HYDROXYACET... (MN0b)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
4d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
View:
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No.
Name
Count
Type
Full Name
1
BEN
1
Ligand/Ion
BENZAMIDINE
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
MN0
2
Ligand/Ion
METHYL 3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSIDONIC ACID
4
MPD
4
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
NA
2
Ligand/Ion
SODIUM ION
6
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:52 , ARG A:101 , GLY A:187 , TYR A:188 , TYR A:189 , SER A:190 , HOH A:277 , HOH A:320 , HOH A:342 , HOH A:357 , HOH A:368 , HOH A:388 , EPE A:2691 , PRO B:68 , GLN B:70
BINDING SITE FOR RESIDUE MN0 A 1000
02
AC2
SOFTWARE
HOH A:34 , THR A:153 , GLN A:154 , HOH A:325
BINDING SITE FOR RESIDUE SO4 A 2000
03
AC3
SOFTWARE
SER A:134 , GLN A:135 , THR A:136 , HOH A:232 , HOH A:253 , GLY B:62 , SER B:63 , LEU B:64 , LEU B:65
BINDING SITE FOR RESIDUE SO4 A 225
04
AC4
SOFTWARE
PRO A:86 , THR A:87 , VAL A:88 , GLY A:90 , VAL A:91 , VAL A:92 , PHE A:202 , CYS A:203 , HOH A:328
BINDING SITE FOR RESIDUE MPD A 4210
05
AC5
SOFTWARE
PRO A:68 , ASP A:204 , HOH A:305 , HOH A:379 , THR B:73 , GLN B:94 , THR B:96 , ASN B:198 , THR B:200
BINDING SITE FOR RESIDUE MPD A 226
06
AC6
SOFTWARE
ASP A:100 , ARG A:101 , HOH A:368 , MN0 A:1000 , HOH B:35 , ASP B:66 , PRO B:68 , TYR B:69 , GLN B:70 , HOH B:239
BINDING SITE FOR RESIDUE EPE A 2691
07
AC7
SOFTWARE
TYR A:175 , THR A:186 , ARG A:210 , GLU A:213
BINDING SITE FOR RESIDUE BEN A 1561
08
AC8
SOFTWARE
ASP A:142 , GLY A:156 , TYR A:165 , THR A:176 , TYR A:177 , HOH A:342
BINDING SITE FOR RESIDUE NA A 1
09
AC9
SOFTWARE
HOH B:46 , ASN B:75 , ARG B:101 , ASN B:178 , GLY B:187 , TYR B:188 , TYR B:189 , SER B:190 , MPD B:225 , HOH B:325 , HOH B:336 , HOH B:360 , HOH B:361 , HOH B:362
BINDING SITE FOR RESIDUE MN0 B 1000
10
BC1
SOFTWARE
PRO B:86 , THR B:87 , VAL B:88 , VAL B:91 , VAL B:92 , CYS B:203
BINDING SITE FOR RESIDUE MPD B 4210
11
BC2
SOFTWARE
TYR B:69 , HOH B:327 , MN0 B:1000
BINDING SITE FOR RESIDUE MPD B 225
12
BC3
SOFTWARE
ASP B:142 , GLY B:156 , TYR B:165 , THR B:176 , TYR B:177 , ASN B:178 , HOH B:363
BINDING SITE FOR RESIDUE NA B 1
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3taya_ (A:)
1b: SCOP_d3tayb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
vp4 sialic acid binding domain
(10)
Protein domain
:
automated matches
(4)
Porcine rotavirus [TaxId: 31578]
(3)
1a
d3taya_
A:
1b
d3tayb_
B:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (69 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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