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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3TA3
Asym. Unit
Info
Asym.Unit (282 KB)
Biol.Unit 1 (275 KB)
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(1)
Title
:
STRUCTURE OF THE MOUSE CD1D-GLC-DAG-S2-INKT TCR COMPLEX
Authors
:
E. Girardi, E. D. Yu, D. M. Zajonc
Date
:
03 Aug 11 (Deposition) - 23 Nov 11 (Release) - 23 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Antigen Presentation, Glycolipid, Nkt Cells, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Girardi, E. D. Yu, Y. Li, N. Tarumoto, B. Pei, J. Wang, P. Illarionov, Y. Kinjo, M. Kronenberg, D. M. Zajonc
Unique Interplay Between Sugar And Lipid In Determining The Antigenic Potency Of Bacterial Antigens For Nkt Cells.
Plos Biol. V. 9 01189 2011
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: (2S)-1-(ALPHA-D-GLUCOPYRANOSYLOXY)... (3TFa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3TF
1
Ligand/Ion
(2S)-1-(ALPHA-D-GLUCOPYRANOSYLOXY)-3-(HEXADECANOYLOXY)PROPAN-2-YL (11Z)-OCTADEC-11-ENOATE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:19 , ASN A:20
BINDING SITE FOR RESIDUE NAG A 500
2
AC2
SOFTWARE
TRP A:23 , SER A:24 , ASN A:42 , HOH A:294 , NAG A:502
BINDING SITE FOR RESIDUE NAG A 501
3
AC3
SOFTWARE
NAG A:501
BINDING SITE FOR RESIDUE NAG A 502
4
AC4
SOFTWARE
GLN A:161 , ASN A:165 , NAG A:512 , FUC A:513
BINDING SITE FOR RESIDUE NAG A 511
5
AC5
SOFTWARE
GLY A:130 , NAG A:511
BINDING SITE FOR RESIDUE NAG A 512
6
AC6
SOFTWARE
SER A:114 , TRP A:129 , GLY A:130 , ASN A:165 , NAG A:511
BINDING SITE FOR RESIDUE FUC A 513
7
AC7
SOFTWARE
GLN A:14 , TYR A:73 , SER A:76 , PHE A:77 , ASP A:80 , PHE A:120 , TRP A:133 , LEU A:150 , ASP A:153 , GLY A:155 , THR A:156 , PRO C:28 , ASN C:30 , ARG C:95 , GLY C:96 , HOH C:221
BINDING SITE FOR RESIDUE 3TF A 286
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain B, )
2: VAR_B2MG_MOUSE_003 (K44E, chain B, )
3: VAR_B2MG_MOUSE_004 (R81T, chain B, )
4: VAR_B2MG_MOUSE_005 (A85D, chain B, )
5: VAR_B2MG_MOUSE_006 (A85V, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B
A
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B
A
85
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
1
B:78-84
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 7)
Info
All SCOP Domains
1a: SCOP_d3ta3c1 (C:1-117)
2a: SCOP_d3ta3a2 (A:186-279)
2b: SCOP_d3ta3c2 (C:118-206)
2c: SCOP_d3ta3d2 (D:113-240)
3a: SCOP_d3ta3b_ (B:)
4a: SCOP_d3ta3d1 (D:2-112)
5a: SCOP_d3ta3a1 (A:7-185)
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d3ta3c1
C:1-117
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d3ta3a2
A:186-279
2b
d3ta3c2
C:118-206
2c
d3ta3d2
D:113-240
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
3a
d3ta3b_
B:
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
4a
d3ta3d1
D:2-112
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Mouse (Mus musculus) [TaxId: 10090]
(29)
5a
d3ta3a1
A:7-185
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Chain D
Asymmetric Unit 1
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Asym.Unit (282 KB)
Header - Asym.Unit
Biol.Unit 1 (275 KB)
Header - Biol.Unit 1
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