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3T9G
Biol. Unit 1
Info
Asym.Unit (89 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (82 KB)
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Title
:
THE CRYSTAL STRUCTURE OF FAMILY 3 PECTATE LYASE FROM CALDICELLULOSIRUPTOR BESCII
Authors
:
P. M. Alahuhta, V. V. Lunin
Date
:
02 Aug 11 (Deposition) - 09 May 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Pl3, Parallel Beta-Helix, Pectate Lyase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Alahuhta, P. Chandrayan, I. Kataeva, M. W. Adams, M. E. Himmel, V. V. Lunin
A 1. 5 A Resolution X-Ray Structure Of The Catalytic Module Of Caldicellulosiruptor Bescii Family 3 Pectate Lyase.
Acta Crystallogr. , Sect. F V. 67 1498 2011
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
6a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
6b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
6c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
6d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
7a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
7b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
7c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
7d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
8a: SODIUM ION (NAa)
8b: SODIUM ION (NAb)
8c: SODIUM ION (NAc)
8d: SODIUM ION (NAd)
9a: PHOSPHATE ION (PO4a)
9b: PHOSPHATE ION (PO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
5
GOL
2
Ligand/Ion
GLYCEROL
6
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
7
MRD
2
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
8
NA
-1
Ligand/Ion
SODIUM ION
9
PO4
-1
Ligand/Ion
PHOSPHATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC2 (SOFTWARE)
10: BC3 (SOFTWARE)
11: BC4 (SOFTWARE)
12: CC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:81 , VAL A:82 , GLU A:104 , HOH A:316 , HOH A:352 , HOH A:361 , HOH A:400
BINDING SITE FOR RESIDUE CA A 201
02
AC2
SOFTWARE
LEU A:6 , ILE A:8 , ILE A:12 , TYR A:20 , HOH A:408 , THR B:0 , ASN B:1 , GLY B:4
BINDING SITE FOR RESIDUE MRD A 202
03
AC3
SOFTWARE
LEU A:6 , HOH A:490 , HOH A:493 , HOH A:558 , HOH A:567 , ASN B:1 , TYR B:20
BINDING SITE FOR RESIDUE MRD A 203
04
AC4
SOFTWARE
LYS A:119 , TYR A:145 , GLU A:147 , PRO A:164 , SER A:186 , TYR A:193 , HOH A:560 , HOH A:568
BINDING SITE FOR RESIDUE MPD A 204
05
AC5
SOFTWARE
GLU A:92 , GLY A:93 , PRO A:115 , CYS A:116 , THR A:117 , LYS A:141 , VAL A:143 , HOH A:317 , HOH A:436 , HOH A:496 , HOH A:554 , HOH A:572 , HOH A:573
BINDING SITE FOR RESIDUE MPD A 205
06
AC6
SOFTWARE
ASP A:64 , GLU A:84 , ASP A:85 , HOH A:374 , HOH A:398
BINDING SITE FOR RESIDUE NA A 206
07
AC7
SOFTWARE
LYS A:108 , LYS A:130 , ARG A:133 , LYS A:160 , HOH A:349 , HOH A:555 , HOH A:569
BINDING SITE FOR RESIDUE GOL A 207
08
AC8
SOFTWARE
ASN A:153 , VAL A:154 , LYS A:155 , ASN A:177 , HOH A:506 , HOH A:564
BINDING SITE FOR RESIDUE GOL A 208
09
BC2
SOFTWARE
ASN A:137 , THR A:139 , HOH A:335 , HOH A:532 , ASP B:148 , ASN B:172
BINDING SITE FOR RESIDUE MRD B 203
10
BC3
SOFTWARE
ASN A:137 , GLN A:192 , HOH A:335 , HOH A:518 , HOH A:532 , LYS B:121 , ASP B:148
BINDING SITE FOR RESIDUE MPD B 204
11
BC4
SOFTWARE
THR A:0 , ASN A:1 , GLY A:4 , LEU B:6 , ILE B:12 , TYR B:20 , HOH B:317
BINDING SITE FOR RESIDUE MPD B 205
12
CC4
SOFTWARE
GLN A:30 , HOH B:517 , HOH B:538
BINDING SITE FOR RESIDUE ACT B 214
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
Header - Biol.Unit 3
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