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3T8W
Biol. Unit 1
Info
Asym.Unit (2.0 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
Biol.Unit 2, α-C (1.0 MB)
Biol.Unit 2 (1.0 MB)
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Title
:
A BESTATIN-BASED CHEMICAL BIOLOGY STRATEGY REVEALS DISTINCT ROLES FOR MALARIA M1- AND M17-FAMILY AMINOPEPTIDASES
Authors
:
S. Mcgowan, M. Klemba, D. C. Greebaum
Date
:
01 Aug 11 (Deposition) - 28 Sep 11 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17-Leucyl Aminopeptidase, Protease, Metallo-Aminopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. B. Harbut, G. Velmourougane, S. Dalal, G. Reiss, J. C. Whisstock, O. Onder, D. Brisson, S. Mcgowan, M. Klemba, D. C. Greenbaum
Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- And M17-Family Aminopeptidases
Proc. Natl. Acad. Sci. Usa V. 108 E526 2011
[
close entry info
]
Hetero Components
(5, 39)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1aa: PENTAETHYLENE GLYCOL (1PEaa)
1ab: PENTAETHYLENE GLYCOL (1PEab)
1ac: PENTAETHYLENE GLYCOL (1PEac)
1ad: PENTAETHYLENE GLYCOL (1PEad)
1ae: PENTAETHYLENE GLYCOL (1PEae)
1af: PENTAETHYLENE GLYCOL (1PEaf)
1ag: PENTAETHYLENE GLYCOL (1PEag)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
1u: PENTAETHYLENE GLYCOL (1PEu)
1v: PENTAETHYLENE GLYCOL (1PEv)
1w: PENTAETHYLENE GLYCOL (1PEw)
1x: PENTAETHYLENE GLYCOL (1PEx)
1y: PENTAETHYLENE GLYCOL (1PEy)
1z: PENTAETHYLENE GLYCOL (1PEz)
2a: NONAETHYLENE GLYCOL (2PEa)
2b: NONAETHYLENE GLYCOL (2PEb)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZa)
4b: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZb)
4c: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZc)
4d: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZd)
4e: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZe)
4f: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZf)
4g: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZg)
4h: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZh)
4i: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZi)
4j: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZj)
4k: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZk)
4l: N-((2R,3S,6S,18S,21S)-2-AMINO-18-(... (DGZl)
5a: SULFATE ION (SO4a)
5aa: SULFATE ION (SO4aa)
5ab: SULFATE ION (SO4ab)
5ac: SULFATE ION (SO4ac)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
5x: SULFATE ION (SO4x)
5y: SULFATE ION (SO4y)
5z: SULFATE ION (SO4z)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
6q: ZINC ION (ZNq)
6r: ZINC ION (ZNr)
6s: ZINC ION (ZNs)
6t: ZINC ION (ZNt)
6u: ZINC ION (ZNu)
6v: ZINC ION (ZNv)
6w: ZINC ION (ZNw)
6x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
14
Ligand/Ion
PENTAETHYLENE GLYCOL
2
2PE
1
Ligand/Ion
NONAETHYLENE GLYCOL
3
CO3
6
Ligand/Ion
CARBONATE ION
4
DGZ
6
Ligand/Ion
N-((2R,3S,6S,18S,21S)-2-AMINO-18-(4-BENZOYLBENZYL)-21-CARBAMOYL-3-HYDROXY-6-(NAPHTHALEN-2-YLMETHYL)-4,7,16,19-TETRAOXO-1-PHENYL-11,14-DIOXA-5,8,17,20-TETRAAZAPENTACOSAN-25-YL)HEX-5-YNAMIDE
5
SO4
12
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(54, 54)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: GC7 (SOFTWARE)
53: GC8 (SOFTWARE)
54: HC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:374 , ALA A:460 , GLY A:462 , ARG A:463 , LEU A:487 , DGZ A:615
BINDING SITE FOR RESIDUE CO3 A 612
02
AC2
SOFTWARE
ASP A:379 , ASP A:459 , GLU A:461 , ZN A:614 , DGZ A:615
BINDING SITE FOR RESIDUE ZN A 613
03
AC3
SOFTWARE
LYS A:374 , ASP A:379 , ASP A:399 , GLU A:461 , ZN A:613 , DGZ A:615
BINDING SITE FOR RESIDUE ZN A 614
04
AC4
SOFTWARE
LYS A:374 , ASP A:379 , LYS A:386 , ALA A:388 , PRO A:389 , GLY A:390 , MET A:392 , ASP A:399 , ASN A:457 , ASP A:459 , GLU A:461 , ARG A:463 , THR A:486 , LEU A:487 , THR A:488 , GLY A:489 , ALA A:490 , TYR A:493 , ILE A:547 , SER A:554 , CO3 A:612 , ZN A:613 , ZN A:614 , HOH A:890 , HOH A:906 , TYR F:493 , LYS F:552 , DGZ F:615
BINDING SITE FOR RESIDUE DGZ A 615
05
AC5
SOFTWARE
ILE A:101 , GLU A:102 , TYR A:103 , ASN A:104 , 1PE A:619 , HOH A:710
BINDING SITE FOR RESIDUE SO4 A 616
06
AC6
SOFTWARE
GLU A:125 , GLY A:126 , LEU A:219 , SER A:220 , HOH A:811 , LYS D:164
BINDING SITE FOR RESIDUE SO4 A 617
07
AC7
SOFTWARE
TYR A:103 , ASN A:104 , HIS A:108 , PHE A:289 , TYR A:411
BINDING SITE FOR RESIDUE 1PE A 618
08
AC8
SOFTWARE
TYR A:103 , GLU A:316 , LYS A:320 , SO4 A:616
BINDING SITE FOR RESIDUE 1PE A 619
09
AC9
SOFTWARE
LYS B:374 , ALA B:460 , GLY B:462 , ARG B:463 , LEU B:487 , DGZ B:615
BINDING SITE FOR RESIDUE CO3 B 612
10
BC1
SOFTWARE
ASP B:379 , ASP B:459 , GLU B:461 , ZN B:614 , DGZ B:615
BINDING SITE FOR RESIDUE ZN B 613
11
BC2
SOFTWARE
LYS B:374 , ASP B:379 , ASP B:399 , GLU B:461 , ZN B:613 , DGZ B:615
BINDING SITE FOR RESIDUE ZN B 614
12
BC3
SOFTWARE
LYS B:374 , ASP B:379 , LYS B:386 , ALA B:388 , PRO B:389 , GLY B:390 , MET B:392 , MET B:396 , ASP B:399 , ASN B:457 , ASP B:459 , GLU B:461 , THR B:486 , LEU B:487 , THR B:488 , GLY B:489 , ALA B:490 , TYR B:493 , SER B:548 , CO3 B:612 , ZN B:613 , ZN B:614 , HOH B:621 , HOH B:672 , HOH B:718 , HOH B:819 , TYR E:493 , LYS E:552 , DGZ E:615
BINDING SITE FOR RESIDUE DGZ B 615
13
BC4
SOFTWARE
TYR B:103 , ASN B:104 , LYS B:320 , TYR B:411 , TYR H:103 , GLU H:316 , LYS H:320 , 2PE H:619
BINDING SITE FOR RESIDUE 2PE B 616
14
BC5
SOFTWARE
LYS C:374 , ALA C:460 , GLU C:461 , GLY C:462 , ARG C:463 , LEU C:487 , DGZ C:615
BINDING SITE FOR RESIDUE CO3 C 612
15
BC6
SOFTWARE
LYS C:374 , ASP C:379 , ASP C:399 , GLU C:461 , ZN C:614 , DGZ C:615
BINDING SITE FOR RESIDUE ZN C 613
16
BC7
SOFTWARE
ASP C:379 , ASP C:459 , GLU C:461 , ZN C:613 , DGZ C:615
BINDING SITE FOR RESIDUE ZN C 614
17
BC8
SOFTWARE
LYS C:374 , ASP C:379 , LYS C:386 , ALA C:388 , PRO C:389 , GLY C:390 , MET C:392 , MET C:396 , PHE C:398 , ASP C:399 , ASN C:457 , ASP C:459 , GLU C:461 , ARG C:463 , THR C:486 , LEU C:487 , THR C:488 , GLY C:489 , ALA C:490 , TYR C:493 , SER C:554 , CO3 C:612 , ZN C:613 , ZN C:614 , HOH C:861 , HOH C:883 , TYR D:493 , DGZ D:615
BINDING SITE FOR RESIDUE DGZ C 615
18
BC9
SOFTWARE
SER A:435 , LYS A:436 , SER B:435 , LYS B:436 , HOH B:831 , SER C:435 , LYS C:436 , HOH C:953
BINDING SITE FOR RESIDUE SO4 C 616
19
CC1
SOFTWARE
GLY C:126 , LEU C:219 , SER C:220 , LYS E:164
BINDING SITE FOR RESIDUE SO4 C 617
20
CC2
SOFTWARE
ASN C:505 , ASN C:506 , THR C:569 , ALA C:570
BINDING SITE FOR RESIDUE SO4 C 618
21
CC3
SOFTWARE
LEU C:214 , HIS C:215 , ASP C:216 , ASN C:217 , ASN C:260 , MET C:261 , GLU C:262 , HOH C:858 , HOH C:923 , HOH C:1032
BINDING SITE FOR RESIDUE SO4 C 619
22
CC4
SOFTWARE
ILE C:529 , ILE C:530 , ASN C:531 , HOH C:879 , HOH C:1041 , TYR D:499
BINDING SITE FOR RESIDUE SO4 C 620
23
CC5
SOFTWARE
TYR C:103 , ASN C:104 , GLU C:316 , LYS C:320
BINDING SITE FOR RESIDUE 1PE C 621
24
CC6
SOFTWARE
TYR C:103 , HIS C:108 , PHE C:289 , TYR C:411
BINDING SITE FOR RESIDUE 1PE C 622
25
CC7
SOFTWARE
LYS D:374 , ALA D:460 , GLU D:461 , GLY D:462 , ARG D:463 , LEU D:487 , DGZ D:615
BINDING SITE FOR RESIDUE CO3 D 612
26
CC8
SOFTWARE
LYS D:374 , ASP D:379 , ASP D:399 , GLU D:461 , ZN D:614 , DGZ D:615
BINDING SITE FOR RESIDUE ZN D 613
27
CC9
SOFTWARE
ASP D:379 , ASP D:459 , GLU D:461 , ZN D:613 , DGZ D:615
BINDING SITE FOR RESIDUE ZN D 614
28
DC1
SOFTWARE
TYR C:493 , DGZ C:615 , LYS D:374 , ASP D:379 , LYS D:386 , ALA D:388 , PRO D:389 , GLY D:390 , MET D:392 , PHE D:398 , ASP D:399 , ASN D:457 , ASP D:459 , GLU D:461 , ARG D:463 , THR D:486 , LEU D:487 , THR D:488 , GLY D:489 , ALA D:490 , TYR D:493 , ILE D:547 , SER D:550 , CO3 D:612 , ZN D:613 , ZN D:614 , HOH D:636 , HOH D:862 , HOH D:1044
BINDING SITE FOR RESIDUE DGZ D 615
29
DC2
SOFTWARE
GLU D:102 , TYR D:103 , ASN D:104 , HOH D:902
BINDING SITE FOR RESIDUE SO4 D 616
30
DC3
SOFTWARE
SER D:435 , LYS D:436 , SER E:435 , LYS E:436 , SER F:435 , LYS F:436
BINDING SITE FOR RESIDUE SO4 D 617
31
DC4
SOFTWARE
TYR D:103 , ASN D:104 , HIS D:108 , LYS D:320 , TYR D:411 , HOH D:745
BINDING SITE FOR RESIDUE 1PE D 618
32
DC5
SOFTWARE
TRP C:526 , SER D:517 , LYS D:518 , VAL D:524 , HOH D:838
BINDING SITE FOR RESIDUE 1PE D 619
33
DC6
SOFTWARE
ASN D:449 , LYS D:451 , ARG D:534 , ASP D:543 , GLU D:564 , GLN D:567 , SER E:254
BINDING SITE FOR RESIDUE 1PE D 620
34
DC7
SOFTWARE
PHE A:156 , ASN A:161 , LYS A:164 , PHE A:165 , MET D:177 , PHE D:178 , SER D:184
BINDING SITE FOR RESIDUE 1PE D 621
35
DC8
SOFTWARE
LYS E:374 , ALA E:460 , GLU E:461 , GLY E:462 , ARG E:463 , LEU E:487 , DGZ E:615
BINDING SITE FOR RESIDUE CO3 E 612
36
DC9
SOFTWARE
LYS E:374 , ASP E:379 , ASP E:399 , GLU E:461 , ZN E:614 , DGZ E:615
BINDING SITE FOR RESIDUE ZN E 613
37
EC1
SOFTWARE
ASP E:379 , ASP E:459 , GLU E:461 , ZN E:613 , DGZ E:615
BINDING SITE FOR RESIDUE ZN E 614
38
EC2
SOFTWARE
TYR B:493 , DGZ B:615 , LYS E:374 , ASP E:379 , LYS E:386 , ALA E:388 , PRO E:389 , GLY E:390 , MET E:392 , PHE E:398 , ASP E:399 , ASN E:457 , ASP E:459 , GLU E:461 , ARG E:463 , THR E:486 , LEU E:487 , THR E:488 , GLY E:489 , ALA E:490 , TYR E:493 , ILE E:547 , SER E:548 , SER E:550 , CO3 E:612 , ZN E:613 , ZN E:614 , HOH E:721 , HOH E:911
BINDING SITE FOR RESIDUE DGZ E 615
39
EC3
SOFTWARE
ASN E:505 , ASN E:506 , THR E:569 , ALA E:570 , HOH E:997 , HOH E:1031 , HOH E:1036
BINDING SITE FOR RESIDUE SO4 E 616
40
EC4
SOFTWARE
GLU E:102 , TYR E:103 , ASN E:104 , 1PE E:619 , HOH E:754 , HOH E:1017
BINDING SITE FOR RESIDUE SO4 E 617
41
EC5
SOFTWARE
PHE C:156 , ASN C:161 , LYS C:164 , TYR E:176 , MET E:177 , SER E:184
BINDING SITE FOR RESIDUE SO4 E 618
42
EC6
SOFTWARE
TYR E:103 , GLU E:316 , LYS E:320 , SO4 E:617 , HOH E:1027
BINDING SITE FOR RESIDUE 1PE E 619
43
EC7
SOFTWARE
TYR E:103 , TYR E:411
BINDING SITE FOR RESIDUE 1PE E 620
44
EC8
SOFTWARE
LYS E:451 , ARG E:534 , ASP E:543 , GLU E:564 , HOH E:941 , SER F:254
BINDING SITE FOR RESIDUE 1PE E 621
45
EC9
SOFTWARE
LYS F:374 , ALA F:460 , GLY F:462 , ARG F:463 , LEU F:487 , DGZ F:615
BINDING SITE FOR RESIDUE CO3 F 612
46
FC1
SOFTWARE
LYS F:374 , ASP F:379 , ASP F:399 , GLU F:461 , ZN F:614 , DGZ F:615
BINDING SITE FOR RESIDUE ZN F 613
47
FC2
SOFTWARE
ASP F:379 , ASP F:459 , GLU F:461 , ZN F:613 , DGZ F:615
BINDING SITE FOR RESIDUE ZN F 614
48
FC3
SOFTWARE
TYR A:493 , DGZ A:615 , LYS F:374 , ASP F:379 , LYS F:386 , ALA F:388 , PRO F:389 , GLY F:390 , MET F:392 , PHE F:398 , ASP F:399 , ASN F:457 , ASP F:459 , GLU F:461 , THR F:486 , LEU F:487 , THR F:488 , GLY F:489 , ALA F:490 , TYR F:493 , ILE F:547 , SER F:548 , VAL F:551 , ALA F:577 , CO3 F:612 , ZN F:613 , ZN F:614 , HOH F:712 , HOH F:835 , HOH F:939
BINDING SITE FOR RESIDUE DGZ F 615
49
FC4
SOFTWARE
TYR F:103 , ASN F:104 , HIS F:108 , LYS F:320 , TYR F:411
BINDING SITE FOR RESIDUE 1PE F 616
50
FC5
SOFTWARE
TYR F:103 , GLU F:316 , GLN F:319 , LYS F:320 , HOH F:794
BINDING SITE FOR RESIDUE 1PE F 617
51
FC6
SOFTWARE
SER D:254 , ASN F:449 , LYS F:451 , ASP F:543 , GLN F:567 , HOH F:871
BINDING SITE FOR RESIDUE 1PE F 618
52
GC7
SOFTWARE
TYR A:115 , ASN A:122 , GLU A:124 , TYR A:270 , TYR G:115 , ASN G:122 , GLU G:124 , TYR G:270 , 1PE G:622
BINDING SITE FOR RESIDUE 1PE G 621
53
GC8
SOFTWARE
ASN A:122 , TYR A:270 , ASN G:122 , TYR G:270 , 1PE G:621 , HOH G:986
BINDING SITE FOR RESIDUE 1PE G 622
54
HC8
SOFTWARE
TYR B:103 , GLU B:316 , LYS B:320 , 2PE B:616 , HOH B:846 , TYR H:103 , LYS H:320 , TYR H:411
BINDING SITE FOR RESIDUE 2PE H 619
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Atom Selection
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
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Stereo
Graphics Window
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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