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3T6Z
Biol. Unit 2
Info
Asym.Unit (266 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (90 KB)
Biol.Unit 4 (258 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STECCHERINUM OCHRACEUM LACCASE OBTAINED BY MULTI-CRYSTALS COMPOSITE DATA COLLECTION TECHNIQUE (60% DOSE)
Authors
:
M. Ferraroni, F. Briganti, I. Matera, M. Kolomytseva, L. Golovleva, A. Scozzafava, A. M. Chernykh
Date
:
29 Jul 11 (Deposition) - 18 Apr 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, I. Matera, A. Chernykh, M. Kolomytseva, L. A. Golovleva A. Scozzafava, F. Briganti
Reaction Intermediates And Redox State Changes In A Blue Laccase From Steccherinum Ochraceum Observed By Crystallographic High/Low X-Ray Dose Experiments.
J. Inorg. Biochem. V. 111 203 2012
[
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
1b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
1c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
1d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
1e: DI(N-ACETYL-D-GLUCOSAMINE) (CBSe)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
2k: COPPER (II) ION (CUk)
2l: COPPER (II) ION (CUl)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CBS
2
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
GOL
6
Ligand/Ion
GLYCEROL
4
SO4
3
Ligand/Ion
SULFATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC8 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: DC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC8
SOFTWARE
VAL A:17 , PRO A:18 , PRO A:187 , HOH A:653 , HOH A:842 , HOH A:856 , GOL B:512 , VAL C:17 , GLY C:20
BINDING SITE FOR RESIDUE GOL A 508
02
BC3
SOFTWARE
HIS B:397 , CYS B:453 , ILE B:455 , HIS B:458
BINDING SITE FOR RESIDUE CU B 501
03
BC4
SOFTWARE
HIS B:67 , HIS B:110 , HIS B:454 , HOH B:827
BINDING SITE FOR RESIDUE CU B 502
04
BC5
SOFTWARE
HIS B:112 , HIS B:402 , HIS B:452 , HOH B:827
BINDING SITE FOR RESIDUE CU B 503
05
BC6
SOFTWARE
HIS B:65 , HIS B:67 , HIS B:400 , HIS B:402 , HOH B:976
BINDING SITE FOR RESIDUE CU B 504
06
BC7
SOFTWARE
ALA A:14 , ASP A:15 , ALA B:14 , ASP B:15 , HOH B:953 , ALA C:14 , ASP C:15 , HOH C:912
BINDING SITE FOR RESIDUE SO4 B 505
07
BC8
SOFTWARE
ASP A:15 , VAL A:17 , HOH A:685 , ASP B:15 , VAL B:17 , HOH B:608 , HOH B:715 , HOH B:746 , HOH B:771 , HOH B:1030 , VAL C:17 , HOH C:640
BINDING SITE FOR RESIDUE SO4 B 506
08
BC9
SOFTWARE
THR B:365 , ALA B:366 , ALA B:367 , SER B:377
BINDING SITE FOR RESIDUE SO4 B 507
09
CC1
SOFTWARE
PHE B:70 , GLN B:71 , LYS B:72 , ASN B:99 , VAL B:100 , PRO B:101 , MET B:103 , HOH B:641 , HOH B:677 , HOH B:932 , HOH B:999
BINDING SITE FOR RESIDUE GOL B 508
10
CC2
SOFTWARE
HIS B:180 , VAL B:181 , ASN B:182 , VAL B:183 , THR C:192 , ASP C:285 , HOH C:952
BINDING SITE FOR RESIDUE GOL B 509
11
CC3
SOFTWARE
ALA B:81 , HIS B:112 , THR B:114 , HOH B:634 , HOH B:710 , HOH B:856
BINDING SITE FOR RESIDUE GOL B 510
12
CC4
SOFTWARE
GLY A:20 , ASN A:182 , ASP B:174 , SER B:189 , VAL B:190 , HOH B:695 , HOH B:753 , HOH B:808 , HOH B:869
BINDING SITE FOR RESIDUE GOL B 511
13
CC5
SOFTWARE
VAL A:17 , GLY A:20 , GOL A:508 , HOH A:653 , HOH A:856 , VAL B:17 , PRO B:18 , PRO B:187 , HOH B:645 , HOH B:715
BINDING SITE FOR RESIDUE GOL B 512
14
CC6
SOFTWARE
ASP B:492 , HIS B:495 , HOH B:1053
BINDING SITE FOR RESIDUE GOL B 513
15
CC7
SOFTWARE
THR B:307 , ASN B:414 , THR B:416 , HOH B:801 , HOH B:1039 , ASP C:420 , HOH C:1047
BINDING SITE FOR RESIDUE CBS B 514
16
CC8
SOFTWARE
GLN B:323 , ASN B:331 , PRO B:389 , ASN B:436 , HOH B:607 , HOH B:780
BINDING SITE FOR RESIDUE CBS B 515
17
DC4
SOFTWARE
ASN B:44 , ALA C:366 , ALA C:367 , SER C:377 , HOH C:800 , HOH C:1043
BINDING SITE FOR RESIDUE SO4 C 505
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d3t6za1 (A:1-131)
1b: SCOP_d3t6za2 (A:132-304)
1c: SCOP_d3t6za3 (A:305-495)
1d: SCOP_d3t6zb1 (B:1-131)
1e: SCOP_d3t6zb2 (B:132-304)
1f: SCOP_d3t6zb3 (B:305-495)
1g: SCOP_d3t6zc1 (C:1-131)
1h: SCOP_d3t6zc2 (C:132-304)
1i: SCOP_d3t6zc3 (C:305-495)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Steccherinum ochraceum [TaxId: 92696]
(5)
1a
d3t6za1
A:1-131
1b
d3t6za2
A:132-304
1c
d3t6za3
A:305-495
1d
d3t6zb1
B:1-131
1e
d3t6zb2
B:132-304
1f
d3t6zb3
B:305-495
1g
d3t6zc1
C:1-131
1h
d3t6zc2
C:132-304
1i
d3t6zc3
C:305-495
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (266 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
Biol.Unit 3 (90 KB)
Header - Biol.Unit 3
Biol.Unit 4 (258 KB)
Header - Biol.Unit 4
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