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3T6X
Asym. Unit
Info
Asym.Unit (268 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (91 KB)
Biol.Unit 4 (259 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STECCHERINUM OCHRACEUM LACCASE OBTAINED BY MULTI-CRYSTALS COMPOSITE DATA COLLECTION TECHNIQUE (20% DOSE)
Authors
:
M. Ferraroni, F. Briganti, I. Matera, M. Kolomytseva, L. Golovleva, A. Scozzafava, A. M. Chernykh
Date
:
29 Jul 11 (Deposition) - 18 Apr 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, I. Matera, A. Chernykh, M. Kolomytseva, L. A. Golovleva A. Scozzafava, F. Briganti
Reaction Intermediates And Redox State Changes In A Blue Laccase From Steccherinum Ochraceum Observed By Crystallographic High/Low X-Ray Dose Experiments.
J. Inorg. Biochem. V. 111 203 2012
[
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Hetero Components
(5, 36)
Info
All Hetero Components
1a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
1b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
1c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
1d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
1e: DI(N-ACETYL-D-GLUCOSAMINE) (CBSe)
1f: DI(N-ACETYL-D-GLUCOSAMINE) (CBSf)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
2k: COPPER (II) ION (CUk)
2l: COPPER (II) ION (CUl)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: PEROXIDE ION (PERa)
4b: PEROXIDE ION (PERb)
4c: PEROXIDE ION (PERc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CBS
6
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
2
CU
12
Ligand/Ion
COPPER (II) ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
PER
3
Ligand/Ion
PEROXIDE ION
5
SO4
7
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:397 , CYS A:453 , ILE A:455 , HIS A:458
BINDING SITE FOR RESIDUE CU A 501
02
AC2
SOFTWARE
HIS A:67 , HIS A:110 , HIS A:454 , PER A:512
BINDING SITE FOR RESIDUE CU A 502
03
AC3
SOFTWARE
HIS A:112 , HIS A:402 , HIS A:452 , PER A:512
BINDING SITE FOR RESIDUE CU A 503
04
AC4
SOFTWARE
HIS A:65 , HIS A:67 , HIS A:400 , HIS A:402 , PER A:512 , HOH A:1106
BINDING SITE FOR RESIDUE CU A 504
05
AC5
SOFTWARE
PRO A:133 , GLY A:258 , ASN A:259 , HOH A:601 , HOH A:767 , HOH A:799 , HOH A:846 , HOH A:945 , HOH A:998
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
ARG A:263 , HOH A:713 , HOH A:723
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
THR A:365 , ALA A:366 , ALA A:367 , SER A:377 , HOH A:940 , HOH A:1118
BINDING SITE FOR RESIDUE SO4 A 507
08
AC8
SOFTWARE
ALA A:81 , HIS A:112 , LEU A:113 , THR A:114 , PHE A:450 , LEU A:459 , HOH A:1069
BINDING SITE FOR RESIDUE GOL A 508
09
AC9
SOFTWARE
VAL A:17 , GLY A:20 , HOH A:658 , HOH A:667 , HOH A:858 , VAL B:17 , PRO B:18 , LEU B:176 , PRO B:187 , GOL C:506
BINDING SITE FOR RESIDUE GOL A 509
10
BC1
SOFTWARE
THR A:307 , ASN A:414 , THR A:416 , ASN A:418 , HOH A:833 , HOH A:1054
BINDING SITE FOR RESIDUE CBS A 510
11
BC2
SOFTWARE
GLN A:323 , ASN A:436 , HOH A:811 , HOH A:892 , HOH A:933 , HOH A:964 , HOH A:1055 , HOH A:1057 , HOH A:1063 , HOH A:1087 , HOH A:1113 , HOH A:1131
BINDING SITE FOR RESIDUE CBS A 511
12
BC3
SOFTWARE
HIS A:65 , HIS A:67 , HIS A:110 , HIS A:112 , HIS A:400 , HIS A:402 , HIS A:452 , HIS A:454 , CU A:502 , CU A:503 , CU A:504 , HOH A:675
BINDING SITE FOR RESIDUE PER A 512
13
BC4
SOFTWARE
HIS B:397 , CYS B:453 , ILE B:455 , HIS B:458 , PHE B:463
BINDING SITE FOR RESIDUE CU B 501
14
BC5
SOFTWARE
HIS B:67 , HIS B:110 , HIS B:454 , PER B:514
BINDING SITE FOR RESIDUE CU B 502
15
BC6
SOFTWARE
HIS B:112 , HIS B:402 , HIS B:452 , PER B:514
BINDING SITE FOR RESIDUE CU B 503
16
BC7
SOFTWARE
HIS B:65 , HIS B:67 , HIS B:400 , HIS B:402 , PER B:514 , HOH B:1037
BINDING SITE FOR RESIDUE CU B 504
17
BC8
SOFTWARE
ALA A:14 , ASP A:15 , HOH A:1032 , ALA B:14 , ASP B:15 , HOH B:806 , ALA C:14 , ASP C:15 , HOH C:910
BINDING SITE FOR RESIDUE SO4 B 505
18
BC9
SOFTWARE
VAL A:17 , HOH A:858 , VAL B:17 , HOH B:651 , HOH B:751 , HOH B:780 , HOH B:1039 , VAL C:17 , HOH C:642
BINDING SITE FOR RESIDUE SO4 B 506
19
CC1
SOFTWARE
THR B:365 , ALA B:366 , ALA B:367 , SER B:377
BINDING SITE FOR RESIDUE SO4 B 507
20
CC2
SOFTWARE
PHE B:70 , GLN B:71 , LYS B:72 , ASN B:99 , VAL B:100 , PRO B:101 , MET B:103 , HOH B:640 , HOH B:677 , HOH B:945 , HOH B:1010
BINDING SITE FOR RESIDUE GOL B 508
21
CC3
SOFTWARE
HIS B:180 , VAL B:181 , ASN B:182 , VAL B:183 , HOH B:929 , ASP C:285
BINDING SITE FOR RESIDUE GOL B 509
22
CC4
SOFTWARE
ALA B:81 , HIS B:112 , THR B:114 , HOH B:632 , HOH B:713 , HOH B:844 , HOH B:863
BINDING SITE FOR RESIDUE GOL B 510
23
CC5
SOFTWARE
ASN A:182 , ASP B:174 , SER B:189 , VAL B:190 , HOH B:700 , HOH B:760 , HOH B:814 , HOH B:877
BINDING SITE FOR RESIDUE GOL B 511
24
CC6
SOFTWARE
THR B:307 , ASN B:414 , THR B:416 , HOH B:686 , HOH B:808 , HOH B:940 , HOH B:989
BINDING SITE FOR RESIDUE CBS B 512
25
CC7
SOFTWARE
GLN B:323 , ASN B:329 , ASN B:331 , GLU B:385 , PRO B:389 , ASN B:436 , HOH B:614
BINDING SITE FOR RESIDUE CBS B 513
26
CC8
SOFTWARE
HIS B:65 , HIS B:67 , HIS B:110 , HIS B:112 , HIS B:400 , HIS B:402 , HIS B:452 , HIS B:454 , CU B:502 , CU B:503 , CU B:504 , HOH B:996
BINDING SITE FOR RESIDUE PER B 514
27
CC9
SOFTWARE
HIS C:397 , CYS C:453 , HIS C:458
BINDING SITE FOR RESIDUE CU C 501
28
DC1
SOFTWARE
HIS C:67 , HIS C:110 , HIS C:454 , PER C:510
BINDING SITE FOR RESIDUE CU C 502
29
DC2
SOFTWARE
HIS C:112 , HIS C:402 , HIS C:452 , PER C:510
BINDING SITE FOR RESIDUE CU C 503
30
DC3
SOFTWARE
HIS C:65 , HIS C:67 , HIS C:400 , HIS C:402 , PER C:510 , HOH C:1078
BINDING SITE FOR RESIDUE CU C 504
31
DC4
SOFTWARE
ASN B:44 , ALA C:366 , ALA C:367 , SER C:377 , HOH C:774 , HOH C:801 , HOH C:992
BINDING SITE FOR RESIDUE SO4 C 505
32
DC5
SOFTWARE
VAL A:17 , LEU A:176 , GOL A:509 , HOH A:858 , VAL C:17 , GLY C:20 , VAL C:22 , HOH C:619 , HOH C:666 , HOH C:762 , HOH C:808 , HOH C:1073
BINDING SITE FOR RESIDUE GOL C 506
33
DC6
SOFTWARE
ASP A:285 , HOH A:875 , HIS C:180 , VAL C:181 , ASN C:182 , VAL C:183 , HOH C:1019
BINDING SITE FOR RESIDUE GOL C 507
34
DC7
SOFTWARE
THR C:307 , ASN C:414 , ASN C:418 , ASP C:421 , HOH C:678 , HOH C:735 , HOH C:748 , HOH C:887
BINDING SITE FOR RESIDUE CBS C 508
35
DC8
SOFTWARE
ASN C:331 , GLU C:385 , ASN C:436 , HOH C:945
BINDING SITE FOR RESIDUE CBS C 509
36
DC9
SOFTWARE
HIS C:65 , HIS C:67 , HIS C:110 , HIS C:112 , HIS C:400 , HIS C:402 , HIS C:452 , HIS C:454 , CU C:502 , CU C:503 , CU C:504
BINDING SITE FOR RESIDUE PER C 510
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d3t6xa1 (A:1-131)
1b: SCOP_d3t6xa2 (A:132-304)
1c: SCOP_d3t6xa3 (A:305-495)
1d: SCOP_d3t6xb1 (B:1-131)
1e: SCOP_d3t6xb2 (B:132-304)
1f: SCOP_d3t6xb3 (B:305-495)
1g: SCOP_d3t6xc1 (C:1-131)
1h: SCOP_d3t6xc2 (C:132-304)
1i: SCOP_d3t6xc3 (C:305-495)
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Classes
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Steccherinum ochraceum [TaxId: 92696]
(5)
1a
d3t6xa1
A:1-131
1b
d3t6xa2
A:132-304
1c
d3t6xa3
A:305-495
1d
d3t6xb1
B:1-131
1e
d3t6xb2
B:132-304
1f
d3t6xb3
B:305-495
1g
d3t6xc1
C:1-131
1h
d3t6xc2
C:132-304
1i
d3t6xc3
C:305-495
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asym.Unit (268 KB)
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Biol.Unit 3 (91 KB)
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