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3T6V
Biol. Unit 4
Info
Asym.Unit (263 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (89 KB)
Biol.Unit 4 (255 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACCASE FROM STECCHERINUM OCHRACEUM
Authors
:
M. Ferraroni, F. Briganti, I. Matera, M. Kolomytseva, L. Golovleva, A. Scozzafava, A. M. Chernykh
Date
:
29 Jul 11 (Deposition) - 18 Apr 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, I. Matera, A. Chernykh, M. Kolomytseva, L. A. Golovleva A. Scozzafava, F. Briganti
Reaction Intermediates And Redox State Changes In A Blue Laccase From Steccherinum Ochraceum Observed By Crystallographic High/Low X-Ray Dose Experiments.
J. Inorg. Biochem. V. 111 203 2012
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
1b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
1c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
1d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
1e: DI(N-ACETYL-D-GLUCOSAMINE) (CBSe)
1f: DI(N-ACETYL-D-GLUCOSAMINE) (CBSf)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
2k: COPPER (II) ION (CUk)
2l: COPPER (II) ION (CUl)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CBS
6
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
SO4
7
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:397 , CYS A:453 , ILE A:455 , HIS A:458
BINDING SITE FOR RESIDUE CU A 501
02
AC2
SOFTWARE
HIS A:67 , TRP A:108 , HIS A:110 , HIS A:454 , HOH A:944
BINDING SITE FOR RESIDUE CU A 502
03
AC3
SOFTWARE
HIS A:112 , HIS A:402 , HIS A:452 , HOH A:944
BINDING SITE FOR RESIDUE CU A 503
04
AC4
SOFTWARE
HIS A:65 , HIS A:67 , HIS A:400 , HIS A:402 , HOH A:654
BINDING SITE FOR RESIDUE CU A 504
05
AC5
SOFTWARE
PRO A:133 , GLY A:258 , ASN A:259 , HOH A:632 , HOH A:705 , HOH A:886 , HOH A:895 , HOH A:947 , HOH A:1003 , HOH A:1037
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
ARG A:263 , HOH A:785 , HOH A:861
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
ALA A:14 , ASP A:15 , ALA B:14 , ASP B:15 , ALA C:14 , ASP C:15 , HOH C:861
BINDING SITE FOR RESIDUE SO4 A 507
08
AC8
SOFTWARE
THR A:365 , ALA A:366 , ALA A:367 , SER A:377 , HOH A:841
BINDING SITE FOR RESIDUE SO4 A 508
09
AC9
SOFTWARE
ALA A:81 , HIS A:112 , LEU A:113 , THR A:114 , PHE A:450 , LEU A:459 , HOH A:623 , HOH A:753 , HOH A:1067
BINDING SITE FOR RESIDUE GOL A 509
10
BC1
SOFTWARE
THR A:307 , ASN A:414 , ASN A:418 , ASP A:420 , HOH A:622 , HOH A:879
BINDING SITE FOR RESIDUE CBS A 510
11
BC2
SOFTWARE
ASN A:331 , ASN A:436 , HOH A:801 , HOH A:814 , HOH A:898 , HOH A:937 , HOH A:1009
BINDING SITE FOR RESIDUE CBS A 511
12
BC3
SOFTWARE
HIS B:397 , CYS B:453 , HIS B:458
BINDING SITE FOR RESIDUE CU B 501
13
BC4
SOFTWARE
HIS B:67 , HIS B:110 , HIS B:454
BINDING SITE FOR RESIDUE CU B 502
14
BC5
SOFTWARE
HIS B:112 , HIS B:402 , HIS B:452
BINDING SITE FOR RESIDUE CU B 503
15
BC6
SOFTWARE
HIS B:65 , HIS B:67 , HIS B:400 , HIS B:402 , HOH B:664
BINDING SITE FOR RESIDUE CU B 504
16
BC7
SOFTWARE
THR B:365 , ALA B:366 , ALA B:367 , SER B:377 , HOH B:945
BINDING SITE FOR RESIDUE SO4 B 505
17
BC8
SOFTWARE
PHE B:70 , GLN B:71 , LYS B:72 , ASN B:99 , VAL B:100 , PRO B:101 , MET B:103 , HOH B:660 , HOH B:903 , HOH B:936
BINDING SITE FOR RESIDUE GOL B 506
18
BC9
SOFTWARE
HIS B:180 , VAL B:181 , ASN B:182 , VAL B:183 , HOH B:904 , THR C:192 , ASP C:285
BINDING SITE FOR RESIDUE GOL B 507
19
CC1
SOFTWARE
ALA B:81 , HIS B:112 , THR B:114 , HOH B:657 , HOH B:797 , HOH B:888 , HOH B:916
BINDING SITE FOR RESIDUE GOL B 508
20
CC2
SOFTWARE
ASN A:182 , ASP B:174 , SER B:189 , VAL B:190 , HOH B:638
BINDING SITE FOR RESIDUE GOL B 509
21
CC3
SOFTWARE
VAL A:17 , GLY A:20 , VAL B:17 , PRO B:18 , LEU B:176 , PRO B:187 , HOH B:703 , HOH B:729 , HOH B:844 , GOL C:507
BINDING SITE FOR RESIDUE GOL B 510
22
CC4
SOFTWARE
THR B:307 , ASN B:414 , THR B:416 , ASN B:418 , HOH B:878 , ASP C:420 , HOH C:836
BINDING SITE FOR RESIDUE CBS B 511
23
CC5
SOFTWARE
GLN B:323 , ASN B:331 , ALA B:387 , PRO B:389 , ASN B:436 , HOH B:942
BINDING SITE FOR RESIDUE CBS B 512
24
CC6
SOFTWARE
HIS C:397 , CYS C:453 , HIS C:458
BINDING SITE FOR RESIDUE CU C 501
25
CC7
SOFTWARE
HIS C:67 , HIS C:110 , HIS C:454
BINDING SITE FOR RESIDUE CU C 502
26
CC8
SOFTWARE
HIS C:112 , HIS C:402 , HIS C:452
BINDING SITE FOR RESIDUE CU C 503
27
CC9
SOFTWARE
HIS C:65 , HIS C:400 , HIS C:402 , HOH C:697
BINDING SITE FOR RESIDUE CU C 504
28
DC1
SOFTWARE
ASP A:15 , VAL A:17 , HOH A:640 , VAL B:17 , HOH B:771 , VAL C:17 , HOH C:607 , HOH C:682 , HOH C:717 , HOH C:757 , HOH C:783
BINDING SITE FOR RESIDUE SO4 C 505
29
DC2
SOFTWARE
ASN B:44 , ALA C:366 , ALA C:367 , SER C:377
BINDING SITE FOR RESIDUE SO4 C 506
30
DC3
SOFTWARE
VAL A:17 , LEU A:176 , GOL B:510 , HOH B:729 , VAL C:17 , GLY C:20 , HOH C:744 , HOH C:817 , HOH C:929 , HOH C:939
BINDING SITE FOR RESIDUE GOL C 507
31
DC4
SOFTWARE
HOH A:708 , HIS C:180 , VAL C:181 , ASN C:182 , VAL C:183
BINDING SITE FOR RESIDUE GOL C 508
32
DC5
SOFTWARE
ASP B:420 , HOH B:644 , THR C:307 , ASN C:414 , THR C:416 , SER C:417 , ASN C:418 , HOH C:842 , HOH C:871 , HOH C:899 , HOH C:925
BINDING SITE FOR RESIDUE CBS C 509
33
DC6
SOFTWARE
ASN C:331 , GLU C:385 , PRO C:389 , ASN C:436
BINDING SITE FOR RESIDUE CBS C 510
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d3t6va1 (A:1-131)
1b: SCOP_d3t6va2 (A:132-304)
1c: SCOP_d3t6va3 (A:305-495)
1d: SCOP_d3t6vb1 (B:1-131)
1e: SCOP_d3t6vb2 (B:132-304)
1f: SCOP_d3t6vb3 (B:305-495)
1g: SCOP_d3t6vc1 (C:1-131)
1h: SCOP_d3t6vc2 (C:132-304)
1i: SCOP_d3t6vc3 (C:305-495)
View:
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Classes
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Steccherinum ochraceum [TaxId: 92696]
(5)
1a
d3t6va1
A:1-131
1b
d3t6va2
A:132-304
1c
d3t6va3
A:305-495
1d
d3t6vb1
B:1-131
1e
d3t6vb2
B:132-304
1f
d3t6vb3
B:305-495
1g
d3t6vc1
C:1-131
1h
d3t6vc2
C:132-304
1i
d3t6vc3
C:305-495
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Label:
Sorry, no Info available
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Asym.Unit (263 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (89 KB)
Header - Biol.Unit 3
Biol.Unit 4 (255 KB)
Header - Biol.Unit 4
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