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3T6V
Biol. Unit 3
Info
Asym.Unit (263 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (89 KB)
Biol.Unit 4 (255 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACCASE FROM STECCHERINUM OCHRACEUM
Authors
:
M. Ferraroni, F. Briganti, I. Matera, M. Kolomytseva, L. Golovleva, A. Scozzafava, A. M. Chernykh
Date
:
29 Jul 11 (Deposition) - 18 Apr 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, I. Matera, A. Chernykh, M. Kolomytseva, L. A. Golovleva A. Scozzafava, F. Briganti
Reaction Intermediates And Redox State Changes In A Blue Laccase From Steccherinum Ochraceum Observed By Crystallographic High/Low X-Ray Dose Experiments.
J. Inorg. Biochem. V. 111 203 2012
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
1b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
1c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
1d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
1e: DI(N-ACETYL-D-GLUCOSAMINE) (CBSe)
1f: DI(N-ACETYL-D-GLUCOSAMINE) (CBSf)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
2k: COPPER (II) ION (CUk)
2l: COPPER (II) ION (CUl)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CBS
2
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC7 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC6 (SOFTWARE)
06: CC7 (SOFTWARE)
07: CC8 (SOFTWARE)
08: CC9 (SOFTWARE)
09: DC1 (SOFTWARE)
10: DC2 (SOFTWARE)
11: DC3 (SOFTWARE)
12: DC4 (SOFTWARE)
13: DC5 (SOFTWARE)
14: DC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
ALA A:14 , ASP A:15 , ALA B:14 , ASP B:15 , ALA C:14 , ASP C:15 , HOH C:861
BINDING SITE FOR RESIDUE SO4 A 507
02
BC9
SOFTWARE
HIS B:180 , VAL B:181 , ASN B:182 , VAL B:183 , HOH B:904 , THR C:192 , ASP C:285
BINDING SITE FOR RESIDUE GOL B 507
03
CC3
SOFTWARE
VAL A:17 , GLY A:20 , VAL B:17 , PRO B:18 , LEU B:176 , PRO B:187 , HOH B:703 , HOH B:729 , HOH B:844 , GOL C:507
BINDING SITE FOR RESIDUE GOL B 510
04
CC4
SOFTWARE
THR B:307 , ASN B:414 , THR B:416 , ASN B:418 , HOH B:878 , ASP C:420 , HOH C:836
BINDING SITE FOR RESIDUE CBS B 511
05
CC6
SOFTWARE
HIS C:397 , CYS C:453 , HIS C:458
BINDING SITE FOR RESIDUE CU C 501
06
CC7
SOFTWARE
HIS C:67 , HIS C:110 , HIS C:454
BINDING SITE FOR RESIDUE CU C 502
07
CC8
SOFTWARE
HIS C:112 , HIS C:402 , HIS C:452
BINDING SITE FOR RESIDUE CU C 503
08
CC9
SOFTWARE
HIS C:65 , HIS C:400 , HIS C:402 , HOH C:697
BINDING SITE FOR RESIDUE CU C 504
09
DC1
SOFTWARE
ASP A:15 , VAL A:17 , HOH A:640 , VAL B:17 , HOH B:771 , VAL C:17 , HOH C:607 , HOH C:682 , HOH C:717 , HOH C:757 , HOH C:783
BINDING SITE FOR RESIDUE SO4 C 505
10
DC2
SOFTWARE
ASN B:44 , ALA C:366 , ALA C:367 , SER C:377
BINDING SITE FOR RESIDUE SO4 C 506
11
DC3
SOFTWARE
VAL A:17 , LEU A:176 , GOL B:510 , HOH B:729 , VAL C:17 , GLY C:20 , HOH C:744 , HOH C:817 , HOH C:929 , HOH C:939
BINDING SITE FOR RESIDUE GOL C 507
12
DC4
SOFTWARE
HOH A:708 , HIS C:180 , VAL C:181 , ASN C:182 , VAL C:183
BINDING SITE FOR RESIDUE GOL C 508
13
DC5
SOFTWARE
ASP B:420 , HOH B:644 , THR C:307 , ASN C:414 , THR C:416 , SER C:417 , ASN C:418 , HOH C:842 , HOH C:871 , HOH C:899 , HOH C:925
BINDING SITE FOR RESIDUE CBS C 509
14
DC6
SOFTWARE
ASN C:331 , GLU C:385 , PRO C:389 , ASN C:436
BINDING SITE FOR RESIDUE CBS C 510
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d3t6va1 (A:1-131)
1b: SCOP_d3t6va2 (A:132-304)
1c: SCOP_d3t6va3 (A:305-495)
1d: SCOP_d3t6vb1 (B:1-131)
1e: SCOP_d3t6vb2 (B:132-304)
1f: SCOP_d3t6vb3 (B:305-495)
1g: SCOP_d3t6vc1 (C:1-131)
1h: SCOP_d3t6vc2 (C:132-304)
1i: SCOP_d3t6vc3 (C:305-495)
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Protein Domains
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)
(
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Organisms
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)
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)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Steccherinum ochraceum [TaxId: 92696]
(5)
1a
d3t6va1
A:1-131
1b
d3t6va2
A:132-304
1c
d3t6va3
A:305-495
1d
d3t6vb1
B:1-131
1e
d3t6vb2
B:132-304
1f
d3t6vb3
B:305-495
1g
d3t6vc1
C:1-131
1h
d3t6vc2
C:132-304
1i
d3t6vc3
C:305-495
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
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Chain C
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (263 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (89 KB)
Header - Biol.Unit 3
Biol.Unit 4 (255 KB)
Header - Biol.Unit 4
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