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3T6R
Asym. Unit
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Asym.Unit (32 KB)
Biol.Unit 1 (14 KB)
Biol.Unit 2 (14 KB)
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(1)
Title
:
STRUCTURE OF UHRF1 IN COMPLEX WITH UNMODIFIED H3 N-TERMINAL TAIL
Authors
:
S. Xie, J. Jakoncic, C. M. Qian
Date
:
29 Jul 11 (Deposition) - 23 Nov 11 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Zinc Finger, Histone Binding, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Xie, J. Jakoncic, C. M. Qian
Uhrf1 Double Tudor Domain And The Adjacent Phd Finger Act Together To Recognize K9Me3-Containing Histone H3 Tail
J. Mol. Biol. V. 415 318 2012
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
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No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
ZN
8
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:302 , CYS A:305 , CYS A:313 , CYS A:316
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
CYS A:318 , CYS A:321 , HIS A:341 , CYS A:344
BINDING SITE FOR RESIDUE ZN A 2
3
AC3
SOFTWARE
CYS A:333 , CYS A:336 , CYS A:360 , CYS A:363
BINDING SITE FOR RESIDUE ZN A 3
4
AC4
SOFTWARE
HOH A:57 , HIS A:319 , GLU A:362 , HIS B:304
BINDING SITE FOR RESIDUE ZN A 8
5
AC5
SOFTWARE
ASP A:334 , ASP A:356 , ASP B:356
BINDING SITE FOR RESIDUE MG A 365
6
AC6
SOFTWARE
CYS B:302 , CYS B:305 , CYS B:313 , CYS B:316
BINDING SITE FOR RESIDUE ZN B 4
7
AC7
SOFTWARE
CYS B:318 , CYS B:321 , HIS B:341 , CYS B:344
BINDING SITE FOR RESIDUE ZN B 5
8
AC8
SOFTWARE
CYS B:333 , CYS B:336 , CYS B:360 , CYS B:363
BINDING SITE FOR RESIDUE ZN B 6
9
AC9
SOFTWARE
GLU A:297 , HIS A:304 , HIS B:319 , GLU B:362
BINDING SITE FOR RESIDUE ZN B 7
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ZF_PHD_1 (A:302-363,B:302-363)
2: ZF_PHD_2 (A:310-364,B:310-364)
3: ZF_RING_2 (A:318-364,B:318-364|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
UHRF1_HUMAN
302-363
2
A:302-363
B:302-363
2
ZF_PHD_2
PS50016
Zinc finger PHD-type profile.
UHRF1_HUMAN
310-366
2
A:310-364
B:310-364
3
ZF_RING_2
PS50089
Zinc finger RING-type profile.
UHRF1_HUMAN
318-364
724-763
2
A:318-364
B:318-364
-
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (D:1-5)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000366696
1
ENSE00001442338
chr1:
228613026-228612546
481
H31T_HUMAN
1-136
136
1
D:1-5
5
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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