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3T6D
Asym. Unit
Info
Asym.Unit (527 KB)
Biol.Unit 1 (505 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE REACTION CENTRE FROM BLASTOCHLORIS VIRIDIS STRAIN DSM 133 (ATCC 19567) SUBSTRAIN-08
Authors
:
A. W. Roszak, A. T. Gardiner, N. W. Isaacs, R. J. Cogdell
Date
:
28 Jul 11 (Deposition) - 23 Nov 11 (Release) - 08 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : C,H,L,M
Biol. Unit 1: C,H,L,M (1x)
Keywords
:
Pigment-Protein Complex, Electron Transport, Photosynthesis, Photosynthetic Reaction Center, Photosynthetic Membranes, Evolution, Genetic Drift
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. W. Roszak, V. Moulisova, A. D. Reksodipuro, A. T. Gardiner, R. Fujii H. Hashimoto, N. W. Isaacs, R. J. Cogdell
New Insights Into The Structure Of The Reaction Centre From Blastochloris Viridis: Evolution In The Laboratory.
Biochem. J. V. 442 27 2012
[
close entry info
]
Hetero Components
(14, 150)
Info
All Hetero Components
01a: BACTERIOCHLOROPHYLL B (BCBa)
01b: BACTERIOCHLOROPHYLL B (BCBb)
01c: BACTERIOCHLOROPHYLL B (BCBc)
01d: BACTERIOCHLOROPHYLL B (BCBd)
02a: BACTERIOPHEOPHYTIN B (BPBa)
02b: BACTERIOPHEOPHYTIN B (BPBb)
03a: DIACYL GLYCEROL (DGAa)
04a: FE (II) ION (FE2a)
05a: N-FORMYLMETHIONINE (FMEa)
06a: GLYCEROL (GOLa)
06aa: GLYCEROL (GOLaa)
06ab: GLYCEROL (GOLab)
06ac: GLYCEROL (GOLac)
06ad: GLYCEROL (GOLad)
06ae: GLYCEROL (GOLae)
06af: GLYCEROL (GOLaf)
06ag: GLYCEROL (GOLag)
06ah: GLYCEROL (GOLah)
06ai: GLYCEROL (GOLai)
06aj: GLYCEROL (GOLaj)
06ak: GLYCEROL (GOLak)
06al: GLYCEROL (GOLal)
06am: GLYCEROL (GOLam)
06an: GLYCEROL (GOLan)
06ao: GLYCEROL (GOLao)
06ap: GLYCEROL (GOLap)
06aq: GLYCEROL (GOLaq)
06ar: GLYCEROL (GOLar)
06as: GLYCEROL (GOLas)
06at: GLYCEROL (GOLat)
06au: GLYCEROL (GOLau)
06av: GLYCEROL (GOLav)
06aw: GLYCEROL (GOLaw)
06ax: GLYCEROL (GOLax)
06ay: GLYCEROL (GOLay)
06az: GLYCEROL (GOLaz)
06b: GLYCEROL (GOLb)
06ba: GLYCEROL (GOLba)
06bb: GLYCEROL (GOLbb)
06c: GLYCEROL (GOLc)
06d: GLYCEROL (GOLd)
06e: GLYCEROL (GOLe)
06f: GLYCEROL (GOLf)
06g: GLYCEROL (GOLg)
06h: GLYCEROL (GOLh)
06i: GLYCEROL (GOLi)
06j: GLYCEROL (GOLj)
06k: GLYCEROL (GOLk)
06l: GLYCEROL (GOLl)
06m: GLYCEROL (GOLm)
06n: GLYCEROL (GOLn)
06o: GLYCEROL (GOLo)
06p: GLYCEROL (GOLp)
06q: GLYCEROL (GOLq)
06r: GLYCEROL (GOLr)
06s: GLYCEROL (GOLs)
06t: GLYCEROL (GOLt)
06u: GLYCEROL (GOLu)
06v: GLYCEROL (GOLv)
06w: GLYCEROL (GOLw)
06x: GLYCEROL (GOLx)
06y: GLYCEROL (GOLy)
06z: GLYCEROL (GOLz)
07a: HEME C (HECa)
07b: HEME C (HECb)
07c: HEME C (HECc)
07d: HEME C (HECd)
08a: (2S,3R)-HEPTANE-1,2,3-TRIOL (HTHa)
09a: HEPTANE-1,2,3-TRIOL (HTOa)
09b: HEPTANE-1,2,3-TRIOL (HTOb)
09c: HEPTANE-1,2,3-TRIOL (HTOc)
09d: HEPTANE-1,2,3-TRIOL (HTOd)
09e: HEPTANE-1,2,3-TRIOL (HTOe)
09f: HEPTANE-1,2,3-TRIOL (HTOf)
09g: HEPTANE-1,2,3-TRIOL (HTOg)
09h: HEPTANE-1,2,3-TRIOL (HTOh)
09i: HEPTANE-1,2,3-TRIOL (HTOi)
09j: HEPTANE-1,2,3-TRIOL (HTOj)
09k: HEPTANE-1,2,3-TRIOL (HTOk)
09l: HEPTANE-1,2,3-TRIOL (HTOl)
09m: HEPTANE-1,2,3-TRIOL (HTOm)
10a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
10b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
10c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
10d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
10e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
10f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
10g: LAURYL DIMETHYLAMINE-N-OXIDE (LDAg)
10h: LAURYL DIMETHYLAMINE-N-OXIDE (LDAh)
10i: LAURYL DIMETHYLAMINE-N-OXIDE (LDAi)
10j: LAURYL DIMETHYLAMINE-N-OXIDE (LDAj)
10k: LAURYL DIMETHYLAMINE-N-OXIDE (LDAk)
10l: LAURYL DIMETHYLAMINE-N-OXIDE (LDAl)
10m: LAURYL DIMETHYLAMINE-N-OXIDE (LDAm)
10n: LAURYL DIMETHYLAMINE-N-OXIDE (LDAn)
10o: LAURYL DIMETHYLAMINE-N-OXIDE (LDAo)
10p: LAURYL DIMETHYLAMINE-N-OXIDE (LDAp)
10q: LAURYL DIMETHYLAMINE-N-OXIDE (LDAq)
10r: LAURYL DIMETHYLAMINE-N-OXIDE (LDAr)
10s: LAURYL DIMETHYLAMINE-N-OXIDE (LDAs)
10t: LAURYL DIMETHYLAMINE-N-OXIDE (LDAt)
10u: LAURYL DIMETHYLAMINE-N-OXIDE (LDAu)
10v: LAURYL DIMETHYLAMINE-N-OXIDE (LDAv)
10w: LAURYL DIMETHYLAMINE-N-OXIDE (LDAw)
10x: LAURYL DIMETHYLAMINE-N-OXIDE (LDAx)
11a: MENAQUINONE-9 (MQ9a)
12a: 15-CIS-1,2-DIHYDRONEUROSPORENE (NS5a)
13a: SULFATE ION (SO4a)
13aa: SULFATE ION (SO4aa)
13ab: SULFATE ION (SO4ab)
13ac: SULFATE ION (SO4ac)
13ad: SULFATE ION (SO4ad)
13ae: SULFATE ION (SO4ae)
13af: SULFATE ION (SO4af)
13ag: SULFATE ION (SO4ag)
13ah: SULFATE ION (SO4ah)
13ai: SULFATE ION (SO4ai)
13aj: SULFATE ION (SO4aj)
13ak: SULFATE ION (SO4ak)
13al: SULFATE ION (SO4al)
13am: SULFATE ION (SO4am)
13an: SULFATE ION (SO4an)
13ao: SULFATE ION (SO4ao)
13b: SULFATE ION (SO4b)
13c: SULFATE ION (SO4c)
13d: SULFATE ION (SO4d)
13e: SULFATE ION (SO4e)
13f: SULFATE ION (SO4f)
13g: SULFATE ION (SO4g)
13h: SULFATE ION (SO4h)
13i: SULFATE ION (SO4i)
13j: SULFATE ION (SO4j)
13k: SULFATE ION (SO4k)
13l: SULFATE ION (SO4l)
13m: SULFATE ION (SO4m)
13n: SULFATE ION (SO4n)
13o: SULFATE ION (SO4o)
13p: SULFATE ION (SO4p)
13q: SULFATE ION (SO4q)
13r: SULFATE ION (SO4r)
13s: SULFATE ION (SO4s)
13t: SULFATE ION (SO4t)
13u: SULFATE ION (SO4u)
13v: SULFATE ION (SO4v)
13w: SULFATE ION (SO4w)
13x: SULFATE ION (SO4x)
13y: SULFATE ION (SO4y)
13z: SULFATE ION (SO4z)
14a: UBIQUINONE-9 (UQ9a)
14b: UBIQUINONE-9 (UQ9b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCB
4
Ligand/Ion
BACTERIOCHLOROPHYLL B
2
BPB
2
Ligand/Ion
BACTERIOPHEOPHYTIN B
3
DGA
1
Ligand/Ion
DIACYL GLYCEROL
4
FE2
1
Ligand/Ion
FE (II) ION
5
FME
1
Mod. Amino Acid
N-FORMYLMETHIONINE
6
GOL
54
Ligand/Ion
GLYCEROL
7
HEC
4
Ligand/Ion
HEME C
8
HTH
1
Ligand/Ion
(2S,3R)-HEPTANE-1,2,3-TRIOL
9
HTO
13
Ligand/Ion
HEPTANE-1,2,3-TRIOL
10
LDA
24
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
11
MQ9
1
Ligand/Ion
MENAQUINONE-9
12
NS5
1
Ligand/Ion
15-CIS-1,2-DIHYDRONEUROSPORENE
13
SO4
41
Ligand/Ion
SULFATE ION
14
UQ9
2
Ligand/Ion
UBIQUINONE-9
[
close Hetero Component info
]
Sites
(149, 149)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
101: LC2 (SOFTWARE)
102: LC3 (SOFTWARE)
103: LC4 (SOFTWARE)
104: LC5 (SOFTWARE)
105: LC6 (SOFTWARE)
106: LC7 (SOFTWARE)
107: LC8 (SOFTWARE)
108: LC9 (SOFTWARE)
109: MC1 (SOFTWARE)
110: MC2 (SOFTWARE)
111: MC3 (SOFTWARE)
112: MC4 (SOFTWARE)
113: MC5 (SOFTWARE)
114: MC6 (SOFTWARE)
115: MC7 (SOFTWARE)
116: MC8 (SOFTWARE)
117: MC9 (SOFTWARE)
118: NC1 (SOFTWARE)
119: NC2 (SOFTWARE)
120: NC3 (SOFTWARE)
121: NC4 (SOFTWARE)
122: NC5 (SOFTWARE)
123: NC6 (SOFTWARE)
124: NC7 (SOFTWARE)
125: NC8 (SOFTWARE)
126: NC9 (SOFTWARE)
127: OC1 (SOFTWARE)
128: OC2 (SOFTWARE)
129: OC3 (SOFTWARE)
130: OC4 (SOFTWARE)
131: OC5 (SOFTWARE)
132: OC6 (SOFTWARE)
133: OC7 (SOFTWARE)
134: OC8 (SOFTWARE)
135: OC9 (SOFTWARE)
136: PC1 (SOFTWARE)
137: PC2 (SOFTWARE)
138: PC3 (SOFTWARE)
139: PC4 (SOFTWARE)
140: PC5 (SOFTWARE)
141: PC6 (SOFTWARE)
142: PC7 (SOFTWARE)
143: PC8 (SOFTWARE)
144: PC9 (SOFTWARE)
145: QC1 (SOFTWARE)
146: QC2 (SOFTWARE)
147: QC3 (SOFTWARE)
148: QC4 (SOFTWARE)
149: QC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
TYR C:56 , LYS C:57 , ASN C:58 , VAL C:59 , LYS C:60 , VAL C:61 , LEU C:62 , PHE C:70 , MET C:74 , MET C:77 , THR C:78 , SER C:82 , CYS C:87 , CYS C:90 , HIS C:91 , LEU C:96 , TYR C:104 , ALA C:107 , ARG C:108 , VAL C:212 , HOH C:416 , HOH C:516
BINDING SITE FOR RESIDUE HEC C 401
002
AC2
SOFTWARE
VAL C:81 , TYR C:89 , TYR C:102 , PRO C:103 , VAL C:106 , MET C:110 , LEU C:111 , MET C:113 , THR C:114 , THR C:131 , CYS C:132 , CYS C:135 , HIS C:136 , PRO C:140 , LEU C:141 , PRO C:142 , MET C:277 , LEU C:289 , ARG C:293
BINDING SITE FOR RESIDUE HEC C 402
003
AC3
SOFTWARE
ARG C:202 , VAL C:203 , VAL C:204 , MET C:233 , SER C:237 , ASN C:243 , CYS C:244 , CYS C:247 , HIS C:248 , PHE C:253 , GLU C:254 , ARG C:264 , ALA C:267 , TRP C:268 , ARG C:272 , HOH C:389 , HOH C:391 , HOH C:463 , HOH C:464 , ILE M:189
BINDING SITE FOR RESIDUE HEC C 403
004
AC4
SOFTWARE
HIS C:124 , VAL C:125 , THR C:128 , GLY C:129 , LEU C:240 , PHE C:246 , GLN C:263 , ILE C:266 , ILE C:271 , MET C:273 , ASP C:304 , CYS C:305 , CYS C:308 , HIS C:309 , THR C:313 , LYS C:314 , PRO C:315 , GOL C:360 , HOH C:486 , HOH C:555 , HOH C:651
BINDING SITE FOR RESIDUE HEC C 404
005
AC5
SOFTWARE
ARG C:216 , SO4 C:348 , GOL C:364 , HIS H:3 , GOL H:280 , LEU M:165 , PHE M:288 , LDA M:717 , HOH M:786
BINDING SITE FOR RESIDUE LDA C 716
006
AC6
SOFTWARE
PHE C:2 , PHE L:246
BINDING SITE FOR RESIDUE LDA C 722
007
AC7
SOFTWARE
CYS C:1 , PHE C:2 , SER L:178 , UQ9 L:503 , BCB M:400
BINDING SITE FOR RESIDUE DGA C 730
008
AC8
SOFTWARE
ARG C:34 , GLN C:37 , ASN C:155 , ARG C:157 , HTO C:357 , HOH C:530 , HOH C:809
BINDING SITE FOR RESIDUE SO4 C 337
009
AC9
SOFTWARE
THR C:207 , ALA C:208 , HOH C:438 , HOH C:768 , HOH C:785 , LYS M:298 , GOL M:334
BINDING SITE FOR RESIDUE SO4 C 338
010
BC1
SOFTWARE
THR C:161 , HIS C:162 , GOL C:368
BINDING SITE FOR RESIDUE SO4 C 339
011
BC2
SOFTWARE
VAL C:61 , GLU C:112 , ARG C:115 , SO4 C:354 , HOH C:540 , HOH C:546
BINDING SITE FOR RESIDUE SO4 C 340
012
BC3
SOFTWARE
ARG C:293 , HOH C:434 , HOH C:670
BINDING SITE FOR RESIDUE SO4 C 341
013
BC4
SOFTWARE
ASN C:196 , LYS C:198 , ARG C:199 , GOL C:365
BINDING SITE FOR RESIDUE SO4 C 342
014
BC5
SOFTWARE
SER C:320 , ARG C:321 , LEU C:322 , GLN C:323 , ASP C:324 , HOH C:656
BINDING SITE FOR RESIDUE SO4 C 343
015
BC6
SOFTWARE
VAL C:45 , LYS C:46 , HOH C:648 , GOL H:288 , LDA H:718
BINDING SITE FOR RESIDUE SO4 C 344
016
BC7
SOFTWARE
PRO C:43 , ALA C:44 , HOH C:605
BINDING SITE FOR RESIDUE SO4 C 345
017
BC8
SOFTWARE
GLU C:79 , PRO C:83 , GLU C:219 , SO4 C:348
BINDING SITE FOR RESIDUE SO4 C 346
018
BC9
SOFTWARE
THR C:207 , SO4 C:352 , TYR H:2
BINDING SITE FOR RESIDUE SO4 C 347
019
CC1
SOFTWARE
LEU C:42 , GLU C:79 , VAL C:212 , SO4 C:346 , GOL C:376 , LDA C:716 , FME H:1
BINDING SITE FOR RESIDUE SO4 C 348
020
CC2
SOFTWARE
PRO C:25 , VAL C:28 , LYS C:29 , LYS C:32 , HOH C:582 , HOH C:617
BINDING SITE FOR RESIDUE SO4 C 349
021
CC3
SOFTWARE
MET C:279 , ASN C:280 , SO4 C:353 , HOH C:598 , HOH C:599
BINDING SITE FOR RESIDUE SO4 C 350
022
CC4
SOFTWARE
CYS C:1 , PHE C:2 , GLU C:3 , TRP L:255 , ARG L:257
BINDING SITE FOR RESIDUE SO4 C 351
023
CC5
SOFTWARE
GLU C:93 , ASN C:94 , GLN C:206 , SO4 C:347 , HOH C:609 , HOH C:639 , HOH C:845 , HOH C:850
BINDING SITE FOR RESIDUE SO4 C 352
024
CC6
SOFTWARE
ASP C:276 , SO4 C:350 , GOL C:366 , HOH C:764 , HOH C:849
BINDING SITE FOR RESIDUE SO4 C 353
025
CC7
SOFTWARE
ARG C:115 , THR C:119 , ILE C:331 , SO4 C:340 , HOH C:421 , HOH C:546
BINDING SITE FOR RESIDUE SO4 C 354
026
CC8
SOFTWARE
ASN C:64 , ARG C:115 , GLU C:327 , LYS C:332
BINDING SITE FOR RESIDUE HTO C 355
027
CC9
SOFTWARE
ALA C:44 , VAL C:45 , ARG C:72 , GLN C:323 , ASP C:324
BINDING SITE FOR RESIDUE HTO C 356
028
DC1
SOFTWARE
LYS C:31 , ARG C:34 , TYR C:144 , ASN C:155 , SO4 C:337 , GOL L:286
BINDING SITE FOR RESIDUE HTO C 357
029
DC2
SOFTWARE
PRO C:4 , PRO C:5 , HIS C:24 , ALA C:26 , HOH C:518 , HOH C:519 , HOH C:817
BINDING SITE FOR RESIDUE HTO C 358
030
DC3
SOFTWARE
VAL C:22 , ASP C:238 , THR C:242 , HOH C:400 , HOH C:484 , THR L:256 , ARG L:257 , HOH L:327 , HOH L:332
BINDING SITE FOR RESIDUE GOL C 359
031
DC4
SOFTWARE
THR C:12 , PHE C:246 , GOL C:373 , HEC C:404 , HOH C:405 , HOH C:406
BINDING SITE FOR RESIDUE GOL C 360
032
DC5
SOFTWARE
GLU C:167 , THR C:168 , ARG C:169 , SER C:170 , HOH C:688 , HIS M:78
BINDING SITE FOR RESIDUE GOL C 361
033
DC6
SOFTWARE
GLU C:21 , LEU C:240 , GLY C:241 , GLY C:311 , VAL C:312 , THR C:313 , GOL C:367 , HOH C:524
BINDING SITE FOR RESIDUE GOL C 362
034
DC7
SOFTWARE
THR C:255 , TRP C:256 , GLY C:257 , HOH C:390 , HOH C:715 , HOH C:798
BINDING SITE FOR RESIDUE GOL C 363
035
DC8
SOFTWARE
PRO C:83 , ARG C:216 , GLY C:217 , LYS C:218 , GLU C:219 , LDA C:716 , LDA M:715
BINDING SITE FOR RESIDUE GOL C 364
036
DC9
SOFTWARE
LEU C:148 , GLN C:297 , SO4 C:342
BINDING SITE FOR RESIDUE GOL C 365
037
EC1
SOFTWARE
ASN C:120 , TRP C:121 , GLN C:123 , TRP C:269 , SO4 C:353 , GOL M:338
BINDING SITE FOR RESIDUE GOL C 366
038
EC2
SOFTWARE
GLU C:21 , LEU C:23 , GOL C:362 , HOH C:583
BINDING SITE FOR RESIDUE GOL C 367
039
EC3
SOFTWARE
HIS C:162 , ARG C:165 , SO4 C:339 , HOH C:842
BINDING SITE FOR RESIDUE GOL C 368
040
EC4
SOFTWARE
MET C:192 , ARG C:199 , SER C:224 , ASP C:225 , HOH C:466 , HOH C:696
BINDING SITE FOR RESIDUE GOL C 369
041
EC5
SOFTWARE
HOH C:579 , HOH C:693
BINDING SITE FOR RESIDUE GOL C 370
042
EC6
SOFTWARE
GLU C:164 , HOH C:674 , ASP L:268 , SER L:273
BINDING SITE FOR RESIDUE GOL C 371
043
EC7
SOFTWARE
ARG C:109 , TYR C:281 , HOH C:421 , HOH C:546 , HOH C:591
BINDING SITE FOR RESIDUE GOL C 372
044
EC8
SOFTWARE
LYS C:314 , GOL C:360 , HOH C:624
BINDING SITE FOR RESIDUE GOL C 373
045
EC9
SOFTWARE
PRO C:5 , HOH C:853
BINDING SITE FOR RESIDUE GOL C 374
046
FC1
SOFTWARE
ARG C:165 , HOH C:563
BINDING SITE FOR RESIDUE GOL C 375
047
FC2
SOFTWARE
PRO C:43 , SO4 C:348
BINDING SITE FOR RESIDUE GOL C 376
048
FC3
SOFTWARE
PRO C:290 , ALA C:291 , SER C:292 , HOH C:646 , HOH C:661 , HOH C:838
BINDING SITE FOR RESIDUE GOL C 377
049
FC4
SOFTWARE
ASN C:94 , ASP M:314 , ALA M:316
BINDING SITE FOR RESIDUE GOL C 378
050
FC5
SOFTWARE
ARG H:33 , ASP H:56 , SO4 H:261 , LDA L:702 , PHE M:256 , HTO M:333
BINDING SITE FOR RESIDUE LDA H 701
051
FC6
SOFTWARE
SO4 C:344 , HOH C:648 , ALA H:5 , LEU H:6 , HOH H:491
BINDING SITE FOR RESIDUE LDA H 718
052
FC7
SOFTWARE
ALA H:19 , HOH H:494 , HOH H:497 , LDA H:720 , HOH M:440
BINDING SITE FOR RESIDUE LDA H 719
053
FC8
SOFTWARE
TYR H:18 , LDA H:719 , LDA L:708
BINDING SITE FOR RESIDUE LDA H 720
054
FC9
SOFTWARE
PRO H:42 , VAL H:59 , TYR H:60 , LEU H:62 , PRO H:63 , ARG H:80 , ARG H:81 , SO4 H:262 , SO4 H:267 , HTO H:273
BINDING SITE FOR RESIDUE LDA H 721
055
GC1
SOFTWARE
TYR H:117 , GLU H:119 , ARG H:233 , LYS H:237
BINDING SITE FOR RESIDUE SO4 H 259
056
GC2
SOFTWARE
LYS H:131 , ARG H:175 , HOH H:523
BINDING SITE FOR RESIDUE SO4 H 260
057
GC3
SOFTWARE
ARG H:33 , ARG H:37 , TYR H:41 , GLU H:55 , ASP H:56 , GLU H:61 , HOH H:303 , HOH H:321 , HOH H:323 , LDA H:701 , LDA L:702 , ARG M:251
BINDING SITE FOR RESIDUE SO4 H 261
058
GC4
SOFTWARE
ARG H:34 , LDA H:721 , HOH H:731
BINDING SITE FOR RESIDUE SO4 H 262
059
GC5
SOFTWARE
GLY H:154 , SER H:186 , ARG H:192 , THR H:193 , HOH H:690 , HOH H:692
BINDING SITE FOR RESIDUE SO4 H 263
060
GC6
SOFTWARE
ASP H:202 , LYS H:204 , SO4 H:271 , GOL H:286 , TYR M:7 , GLN M:9
BINDING SITE FOR RESIDUE SO4 H 264
061
GC7
SOFTWARE
ALA H:160 , ASP H:161 , GLY H:162 , LEU L:21
BINDING SITE FOR RESIDUE SO4 H 265
062
GC8
SOFTWARE
VAL H:124 , GLY H:130 , LYS H:131 , ALA H:132 , HOH H:834
BINDING SITE FOR RESIDUE SO4 H 266
063
GC9
SOFTWARE
LEU H:22 , TRP H:25 , THR H:26 , LEU H:30 , VAL H:59 , LDA H:721
BINDING SITE FOR RESIDUE SO4 H 267
064
HC1
SOFTWARE
ASN H:106 , PRO H:107 , GLN H:217 , TYR H:248 , HOH H:549
BINDING SITE FOR RESIDUE SO4 H 268
065
HC2
SOFTWARE
LEU H:224 , SER H:226 , ARG H:227 , HOH H:698
BINDING SITE FOR RESIDUE SO4 H 269
066
HC3
SOFTWARE
HIS H:9 , LYS M:298 , GOL M:334
BINDING SITE FOR RESIDUE SO4 H 270
067
HC4
SOFTWARE
ASP H:202 , LYS H:204 , SO4 H:264 , HOH H:811 , HOH H:847 , HOH H:848 , TYR M:3
BINDING SITE FOR RESIDUE SO4 H 271
068
HC5
SOFTWARE
SER H:226 , ARG H:227 , ASP H:228 , GLN H:229
BINDING SITE FOR RESIDUE HTO H 272
069
HC6
SOFTWARE
LEU H:30 , ARG H:34 , HOH H:499 , LDA H:721 , HOH H:802
BINDING SITE FOR RESIDUE HTO H 273
070
HC7
SOFTWARE
ALA H:5 , LEU H:6 , ALA H:7
BINDING SITE FOR RESIDUE HTO H 274
071
HC8
SOFTWARE
LEU H:137 , ARG H:138 , THR H:141 , PHE H:143 , ARG H:153 , HOH H:686 , HOH H:693
BINDING SITE FOR RESIDUE GOL H 275
072
HC9
SOFTWARE
TYR H:31 , GLU H:35 , LYS H:66 , HOH H:805 , ASN L:199 , ARG M:265 , SO4 M:324
BINDING SITE FOR RESIDUE GOL H 276
073
IC1
SOFTWARE
VAL H:124 , ASP H:125 , ALA H:126 , HOH H:504 , HOH H:676 , HOH H:799
BINDING SITE FOR RESIDUE GOL H 277
074
IC2
SOFTWARE
THR H:250 , ARG H:253 , HOH H:703
BINDING SITE FOR RESIDUE GOL H 278
075
IC3
SOFTWARE
ASP H:149 , VAL H:150 , ASP H:151 , LYS H:205 , HOH H:793
BINDING SITE FOR RESIDUE GOL H 279
076
IC4
SOFTWARE
LDA C:716 , HIS H:3 , GLY H:4 , ALA H:5 , PHE M:288
BINDING SITE FOR RESIDUE GOL H 280
077
IC5
SOFTWARE
GLU H:147 , HOH H:397 , TYR M:36
BINDING SITE FOR RESIDUE GOL H 281
078
IC6
SOFTWARE
ARG H:80 , ARG H:82
BINDING SITE FOR RESIDUE GOL H 282
079
IC7
SOFTWARE
VAL H:221 , PRO H:222 , ARG H:223 , HOH H:315 , HOH H:537
BINDING SITE FOR RESIDUE GOL H 283
080
IC8
SOFTWARE
LEU H:90 , ALA H:91 , GLN H:92 , GOL H:289 , ARG L:7
BINDING SITE FOR RESIDUE GOL H 284
081
IC9
SOFTWARE
PRO H:71 , HIS H:72 , HOH H:506 , HOH H:829 , SO4 L:275
BINDING SITE FOR RESIDUE GOL H 285
082
JC1
SOFTWARE
LYS H:204 , LYS H:205 , SO4 H:264 , HOH H:671 , HOH H:734
BINDING SITE FOR RESIDUE GOL H 286
083
JC2
SOFTWARE
LYS H:207
BINDING SITE FOR RESIDUE GOL H 287
084
JC3
SOFTWARE
SO4 C:344 , ALA H:7 , GLN H:8
BINDING SITE FOR RESIDUE GOL H 288
085
JC4
SOFTWARE
GLU H:87 , LEU H:88 , LEU H:90 , THR H:104 , GOL H:284 , HOH H:332 , HOH H:717
BINDING SITE FOR RESIDUE GOL H 289
086
JC5
SOFTWARE
GLU H:97 , GLY H:98 , ALA H:99 , ARG L:10
BINDING SITE FOR RESIDUE GOL H 290
087
JC6
SOFTWARE
THR H:141 , ASP H:142
BINDING SITE FOR RESIDUE GOL H 291
088
JC7
SOFTWARE
MET L:127 , PHE L:128 , VAL L:157 , PHE L:160 , GLY L:161 , TYR L:162 , TRP L:167 , HIS L:168 , HIS L:173 , SER L:176 , VAL L:177 , PHE L:241 , GLY L:244 , THR L:248 , BCB L:401 , TYR M:195 , TYR M:208 , BCB M:401 , MQ9 M:501
BINDING SITE FOR RESIDUE BCB L 400
089
JC8
SOFTWARE
PHE L:128 , PHE L:146 , ILE L:150 , HIS L:153 , LEU L:154 , VAL L:157 , HOH L:313 , BCB L:400 , BPB L:402 , GLY M:201 , ILE M:204 , GLY M:205 , TYR M:208 , GLY M:209 , HTO M:333 , BCB M:401
BINDING SITE FOR RESIDUE BCB L 401
090
JC9
SOFTWARE
PHE L:41 , TRP L:100 , GLU L:104 , VAL L:117 , PHE L:121 , PRO L:124 , TYR L:148 , GLY L:149 , ILE L:150 , ALA L:237 , BCB L:401 , TYR M:208 , LEU M:212 , TRP M:250 , ILE M:254 , MQ9 M:501
BINDING SITE FOR RESIDUE BPB L 402
091
KC1
SOFTWARE
VAL L:182 , HIS L:190 , LEU L:193 , ILE L:194 , GLU L:212 , ASN L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , ILE L:229 , LEU L:232 , PHE M:59 , TRP M:127 , BCB M:400
BINDING SITE FOR RESIDUE UQ9 L 502
092
KC2
SOFTWARE
DGA C:730 , TRP L:263 , TRP L:266 , HOH L:803 , PHE M:85 , PHE M:89
BINDING SITE FOR RESIDUE UQ9 L 503
093
KC3
SOFTWARE
TRP H:25 , SO4 H:261 , LDA H:701 , TYR L:29 , ILE M:254 , GLY M:255 , PHE M:256
BINDING SITE FOR RESIDUE LDA L 702
094
KC4
SOFTWARE
TYR L:29 , MQ9 M:501
BINDING SITE FOR RESIDUE LDA L 703
095
KC5
SOFTWARE
LDA H:720 , ASP L:60 , GOL L:287 , TYR M:195 , CYS M:197 , HIS M:299
BINDING SITE FOR RESIDUE LDA L 708
096
KC6
SOFTWARE
TYR L:148
BINDING SITE FOR RESIDUE LDA L 709
097
KC7
SOFTWARE
LEU L:75 , GLY L:76 , THR L:90 , TRP L:142 , HTO L:277 , LDA L:711
BINDING SITE FOR RESIDUE LDA L 710
098
KC8
SOFTWARE
GLY L:76 , ALA L:77 , GOL L:285 , LDA L:710
BINDING SITE FOR RESIDUE LDA L 711
099
KC9
SOFTWARE
LEU L:75 , LEU L:137 , GLY L:140 , GOL L:285 , GOL L:288
BINDING SITE FOR RESIDUE LDA L 712
100
LC1
SOFTWARE
ARG L:231 , ASN L:239 , LEU L:242 , HOH L:833
BINDING SITE FOR RESIDUE LDA L 723
101
LC2
SOFTWARE
CYS L:122 , ILE L:125
BINDING SITE FOR RESIDUE LDA L 724
102
LC3
SOFTWARE
GLY L:27 , TYR L:29 , HOH L:821 , MQ9 M:501
BINDING SITE FOR RESIDUE SO4 L 274
103
LC4
SOFTWARE
LEU H:70 , PRO H:71 , HIS H:72 , GLY H:73 , GOL H:285 , HOH H:506 , LYS L:205 , HOH L:860
BINDING SITE FOR RESIDUE SO4 L 275
104
LC5
SOFTWARE
GLY L:114 , TRP L:115 , LEU L:119 , HOH L:328 , HOH L:481 , ALA M:1 , SO4 M:326
BINDING SITE FOR RESIDUE HTO L 276
105
LC6
SOFTWARE
ALA L:77 , ALA L:78 , LEU L:80 , GLY L:84 , GLN L:87 , HTO L:278 , LDA L:710
BINDING SITE FOR RESIDUE HTO L 277
106
LC7
SOFTWARE
ALA L:77 , PRO L:79 , LEU L:80 , HTO L:277 , HOH L:325
BINDING SITE FOR RESIDUE HTO L 278
107
LC8
SOFTWARE
VAL L:36
BINDING SITE FOR RESIDUE HTO L 279
108
LC9
SOFTWARE
LYS L:72 , TYR L:73 , HOH L:820
BINDING SITE FOR RESIDUE HTO L 280
109
MC1
SOFTWARE
GLU H:177 , ILE L:224 , GLY L:225 , ALA L:226 , LEU L:227 , SER L:228 , HOH L:331 , HOH L:707 , GLY M:42
BINDING SITE FOR RESIDUE GOL L 281
110
MC2
SOFTWARE
ARG C:15 , ALA L:52 , GLN L:55 , GLY L:56 , SER L:65 , LEU L:81 , HOH L:330 , HOH L:456 , HOH L:797 , GOL M:335
BINDING SITE FOR RESIDUE GOL L 282
111
MC3
SOFTWARE
ASP L:204 , LYS L:205 , LYS L:207 , HOH L:740 , HOH L:781 , GLY M:139
BINDING SITE FOR RESIDUE GOL L 283
112
MC4
SOFTWARE
THR L:58 , TRP L:59 , GOL L:287 , HOH L:441
BINDING SITE FOR RESIDUE GOL L 284
113
MC5
SOFTWARE
LEU L:75 , GLY L:76 , LDA L:711 , LDA L:712
BINDING SITE FOR RESIDUE GOL L 285
114
MC6
SOFTWARE
HTO C:357 , ARG L:257
BINDING SITE FOR RESIDUE GOL L 286
115
MC7
SOFTWARE
TRP L:59 , ASP L:60 , PRO L:61 , GOL L:284 , LDA L:708
BINDING SITE FOR RESIDUE GOL L 287
116
MC8
SOFTWARE
LEU L:71 , GLY L:74 , GLY L:140 , SER L:141 , HOH L:563 , LDA L:712 , HOH L:819
BINDING SITE FOR RESIDUE GOL L 288
117
MC9
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:217 , GLU M:232 , HIS M:264
BINDING SITE FOR RESIDUE FE2 M 500
118
NC1
SOFTWARE
PHE L:43 , ARG L:103 , SO4 L:274 , BCB L:400 , BPB L:402 , LDA L:703 , HIS M:217 , THR M:220 , ALA M:246 , TRP M:250 , PHE M:256 , ASN M:257 , ALA M:258 , THR M:259 , ILE M:260 , PHE M:270
BINDING SITE FOR RESIDUE MQ9 M 501
119
NC2
SOFTWARE
DGA C:730 , HIS L:168 , MET L:174 , VAL L:177 , SER L:178 , PHE L:181 , VAL L:220 , HOH L:306 , UQ9 L:502 , ILE M:177 , HIS M:180 , ILE M:181 , LEU M:184 , GOL M:342 , BCB M:401 , BPB M:402 , NS5 M:600
BINDING SITE FOR RESIDUE BCB M 400
120
NC3
SOFTWARE
TYR L:162 , PHE L:181 , BCB L:400 , BCB L:401 , GLY M:62 , ILE M:69 , LEU M:124 , PHE M:154 , VAL M:155 , LEU M:184 , SER M:188 , PHE M:194 , TYR M:195 , HIS M:200 , SER M:203 , ILE M:204 , TYR M:208 , MET M:275 , ALA M:278 , ILE M:282 , BCB M:400 , BPB M:402
BINDING SITE FOR RESIDUE BCB M 401
121
NC4
SOFTWARE
PHE L:181 , MET L:185 , LEU L:189 , VAL L:220 , PHE M:59 , ILE M:66 , LEU M:67 , SER M:123 , LEU M:124 , TRP M:127 , ILE M:144 , ASN M:147 , PHE M:148 , SER M:271 , BCB M:400 , BCB M:401
BINDING SITE FOR RESIDUE BPB M 402
122
NC5
SOFTWARE
ILE M:66 , GLY M:70 , LEU M:74 , PHE M:88 , ILE M:104 , GLY M:117 , MET M:120 , THR M:121 , GLY M:159 , VAL M:173 , PHE M:175 , GLY M:176 , ILE M:177 , HIS M:180 , BCB M:400
BINDING SITE FOR RESIDUE NS5 M 600
123
NC6
SOFTWARE
SER M:35 , TYR M:36 , TRP M:37
BINDING SITE FOR RESIDUE LDA M 704
124
NC7
SOFTWARE
TRP M:23 , LEU M:122 , SER M:133 , SO4 M:325
BINDING SITE FOR RESIDUE LDA M 705
125
NC8
SOFTWARE
TRP M:146 , SO4 M:327
BINDING SITE FOR RESIDUE LDA M 706
126
NC9
SOFTWARE
VAL H:27 , TYR H:31 , ASN L:199 , ARG M:136 , GLY M:141 , THR M:142 , HIS M:143 , ARG M:265 , TRP M:268 , PHE M:269 , SO4 M:324 , SO4 M:327
BINDING SITE FOR RESIDUE LDA M 707
127
OC1
SOFTWARE
LEU M:67 , ASN M:72 , ALA M:75 , GOL M:341
BINDING SITE FOR RESIDUE LDA M 713
128
OC2
SOFTWARE
ILE M:104 , PRO M:105 , PRO M:106 , LEU M:107 , HIS M:108 , GLY M:111 , GOL M:341
BINDING SITE FOR RESIDUE LDA M 714
129
OC3
SOFTWARE
GOL C:364 , GLY M:101 , MET M:102 , GLY M:103 , ALA M:164 , GLY M:167 , HOH M:439 , HOH M:786
BINDING SITE FOR RESIDUE LDA M 715
130
OC4
SOFTWARE
LDA C:716
BINDING SITE FOR RESIDUE LDA M 717
131
OC5
SOFTWARE
GOL H:276 , HOH H:805 , HIS M:143 , ARG M:265 , LDA M:707
BINDING SITE FOR RESIDUE SO4 M 324
132
OC6
SOFTWARE
TRP M:23 , TYR M:50 , GLY M:52 , ALA M:53 , SER M:54 , HOH M:345 , HOH M:358 , HOH M:410 , LDA M:705
BINDING SITE FOR RESIDUE SO4 M 325
133
OC7
SOFTWARE
LEU H:246 , HTO L:276 , HOH L:481 , ALA M:1 , ARG M:226 , HOH M:545 , HOH M:681
BINDING SITE FOR RESIDUE SO4 M 326
134
OC8
SOFTWARE
TYR M:132 , ARG M:136 , THR M:142 , TRP M:146 , LDA M:706 , LDA M:707
BINDING SITE FOR RESIDUE SO4 M 327
135
OC9
SOFTWARE
TYR M:308 , LEU M:309
BINDING SITE FOR RESIDUE SO4 M 328
136
PC1
SOFTWARE
TYR M:308 , LEU M:309 , PRO M:310 , HOH M:451
BINDING SITE FOR RESIDUE SO4 M 329
137
PC2
SOFTWARE
TYR M:100 , ILE M:104 , PRO M:106
BINDING SITE FOR RESIDUE SO4 M 330
138
PC3
SOFTWARE
ARG M:136 , HOH M:832
BINDING SITE FOR RESIDUE SO4 M 331
139
PC4
SOFTWARE
TYR M:7 , LYS M:40 , HOH M:763
BINDING SITE FOR RESIDUE HTH M 332
140
PC5
SOFTWARE
LDA H:701 , BCB L:401 , PRO M:198
BINDING SITE FOR RESIDUE HTO M 333
141
PC6
SOFTWARE
ALA C:208 , LEU C:209 , SO4 C:338 , TYR H:2 , SO4 H:270 , LYS M:298 , HOH M:784
BINDING SITE FOR RESIDUE GOL M 334
142
PC7
SOFTWARE
GOL L:282 , ASP M:304 , HOH M:407 , HOH M:444
BINDING SITE FOR RESIDUE GOL M 335
143
PC8
SOFTWARE
TRP M:23 , GLY M:24 , ASP M:25 , ASN M:26 , ASP M:27 , HOH M:411
BINDING SITE FOR RESIDUE GOL M 336
144
PC9
SOFTWARE
ASP M:27 , GLY M:52 , ALA M:53 , ILE M:56
BINDING SITE FOR RESIDUE GOL M 337
145
QC1
SOFTWARE
GLN C:123 , TRP C:269 , GOL C:366 , PRO M:319 , GLY M:320 , ALA M:321
BINDING SITE FOR RESIDUE GOL M 338
146
QC2
SOFTWARE
ASP M:25 , ASN M:26 , ARG M:28 , HOH M:852
BINDING SITE FOR RESIDUE GOL M 339
147
QC3
SOFTWARE
HIS M:16 , TYR M:34
BINDING SITE FOR RESIDUE GOL M 340
148
QC4
SOFTWARE
TRP M:112 , LDA M:713 , LDA M:714
BINDING SITE FOR RESIDUE GOL M 341
149
QC5
SOFTWARE
GLY M:30 , LYS M:31 , BCB M:400
BINDING SITE FOR RESIDUE GOL M 342
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (C:82-314)
2: REACTION_CENTER (L:166-192,M:193-219)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
CYCR_BLAVI
102-334
1
C:82-314
2
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_BLAVI
167-193
1
L:166-192
RCEM_BLAVI
194-220
1
M:193-219
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d3t6dc_ (C:)
2a: SCOP_d3t6dh2 (H:37-258)
3a: SCOP_d3t6dl_ (L:)
3b: SCOP_d3t6dm_ (M:)
4a: SCOP_d3t6dh1 (H:1-36)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Photosynthetic reaction centre (cytochrome subunit)
(20)
Protein domain
:
automated matches
(1)
Blastochloris viridis [TaxId: 1079]
(1)
1a
d3t6dc_
C:
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
automated matches
(10)
Blastochloris viridis [TaxId: 1079]
(4)
2a
d3t6dh2
H:37-258
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
automated matches
(44)
Blastochloris viridis [TaxId: 1079]
(7)
3a
d3t6dl_
L:
3b
d3t6dm_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Blastochloris viridis [TaxId: 1079]
(4)
4a
d3t6dh1
H:1-36
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Sidechain
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Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain H
Chain L
Chain M
Asymmetric Unit 1
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (527 KB)
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