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3T67
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (905 KB)
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(1)
Title
:
AXIAL LIGAND SWAPPING IN DOUBLE MUTANT MAINTAINS INTRADIOL-CLEAVAGE CHEMISTRY IN PROTOCATECHUATE 3,4-DIOXYGENASE
Authors
:
V. M. Purpero, J. D. Lipscomb
Date
:
28 Jul 11 (Deposition) - 01 Aug 12 (Release) - 01 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B,C,M,N,O
Biol. Unit 1: A,B,C,M,N,O (4x)
Keywords
:
Non-Heme Ironiii Dependent Intradiol Dioxygenase, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
V. M. Purpero, J. D. Lipscomb
Axial Ligand Swapping In Double Mutant Maintains Intradiol-Cleavage Chemistry In Protocatechuate 3, 4-Dioxygenase
To Be Published
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: CATECHOL (CAQa)
1b: CATECHOL (CAQb)
1c: CATECHOL (CAQc)
1d: CATECHOL (CAQd)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CAQ
4
Ligand/Ion
CATECHOL
2
FE
3
Ligand/Ion
FE (III) ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:37 , THR A:105 , HIS A:107 , HOH A:850
BINDING SITE FOR RESIDUE SO4 A 201
02
AC2
SOFTWARE
ILE A:171 , ARG A:184 , PHE A:185 , ASP A:186 , ARG A:188
BINDING SITE FOR RESIDUE GOL A 202
03
AC3
SOFTWARE
ASN B:37 , ARG B:38 , THR B:105 , HIS B:107
BINDING SITE FOR RESIDUE SO4 B 201
04
AC4
SOFTWARE
ASN C:37 , THR C:105 , HIS C:107
BINDING SITE FOR RESIDUE SO4 C 201
05
AC5
SOFTWARE
THR C:169 , ILE C:171 , ARG C:184 , PHE C:185 , ASP C:186 , ARG C:188 , HOH C:861
BINDING SITE FOR RESIDUE GOL C 202
06
AC6
SOFTWARE
PRO C:164 , ARG C:167
BINDING SITE FOR RESIDUE CAQ C 203
07
AC7
SOFTWARE
CAQ M:1 , TYR M:408 , TYR M:447 , HIS M:460 , HIS M:462
BINDING SITE FOR RESIDUE FE M 600
08
AC8
SOFTWARE
PRO A:15 , TYR A:16 , HOH A:238 , TYR M:408 , TYR M:447 , ARG M:457 , HIS M:460 , HIS M:462 , FE M:600 , HOH M:794
BINDING SITE FOR RESIDUE CAQ M 1
09
AC9
SOFTWARE
CAQ N:1 , TYR N:408 , TYR N:447 , HIS N:460 , HIS N:462
BINDING SITE FOR RESIDUE FE N 600
10
BC1
SOFTWARE
PRO B:15 , TYR B:16 , HOH B:209 , TYR N:408 , TYR N:447 , ARG N:457 , HIS N:460 , HIS N:462 , FE N:600 , HOH N:785
BINDING SITE FOR RESIDUE CAQ N 1
11
BC2
SOFTWARE
CAQ O:1 , TYR O:408 , TYR O:447 , HIS O:460 , HIS O:462
BINDING SITE FOR RESIDUE FE O 600
12
BC3
SOFTWARE
PRO C:15 , TYR C:16 , HOH C:207 , TYR O:408 , TYR O:447 , ARG O:457 , HIS O:460 , HIS O:462 , FE O:600 , HOH O:787
BINDING SITE FOR RESIDUE CAQ O 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: INTRADIOL_DIOXYGENAS (A:51-79,B:51-79,C:51-79,M:380-408,...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTRADIOL_DIOXYGENAS
PS00083
Intradiol ring-cleavage dioxygenases signature.
PCXA_PSEPU
52-80
3
A:51-79
B:51-79
C:51-79
PCXB_PSEPU
81-109
3
M:380-408
N:380-408
O:380-408
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3t67a_ (A:)
1b: SCOP_d3t67b_ (B:)
1c: SCOP_d3t67c_ (C:)
2a: SCOP_d3t67m_ (M:)
2b: SCOP_d3t67n_ (N:)
2c: SCOP_d3t67o_ (O:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Aromatic compound dioxygenase
(111)
Family
:
Aromatic compound dioxygenase
(100)
Protein domain
:
Protocatechuate-3,4-dioxygenase, alpha chain
(37)
Pseudomonas putida [TaxId: 303]
(31)
1a
d3t67a_
A:
1b
d3t67b_
B:
1c
d3t67c_
C:
Protein domain
:
Protocatechuate-3,4-dioxygenase, beta chain
(44)
Pseudomonas putida [TaxId: 303]
(31)
2a
d3t67m_
M:
2b
d3t67n_
N:
2c
d3t67o_
O:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain O
Asymmetric Unit 1
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Asym.Unit (235 KB)
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