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3T5G
Asym. Unit
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Asym.Unit (67 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
STRUCTURE OF FULLY MODIFIED FARNESYLATED RHEB IN COMPLEX WITH PDE6D
Authors
:
S. A. Ismail, Y. -X. Chen, A. Wittinghofer
Date
:
27 Jul 11 (Deposition) - 26 Oct 11 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Immunoglobulin-Like Beta Sandwitch, Pde Delta, Rheb, Farnesyl, Signaling Protein, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Ismail, Y. X. Chen, A. Rusinova, A. Chandra, M. Bierbaum, L. Gremer, G. Triola, H. Waldmann, P. I. Bastiaens, A. Wittinghofer
Arl2-Gtp And Arl3-Gtp Regulate A Gdi-Like Transport System For Farnesylated Cargo.
Nat. Chem. Biol. V. 7 942 2011
[
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: O-METHYLCYSTEINE (CMTa)
2a: FARNESYL (FARa)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMT
1
Mod. Amino Acid
O-METHYLCYSTEINE
2
FAR
1
Ligand/Ion
FARNESYL
3
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:16 , VAL A:17 , GLY A:18 , LYS A:19 , SER A:20 , SER A:21 , PHE A:31 , ASN A:119 , LYS A:120 , ASP A:122 , LEU A:123 , SER A:149 , ALA A:150 , LYS A:151 , HOH A:197 , MG A:202 , HOH A:212 , HOH A:288 , HOH A:294 , HOH A:298 , HOH A:304 , HOH A:362 , HOH A:395 , HOH A:434 , HOH A:449
BINDING SITE FOR RESIDUE GDP A 201
2
AC2
SOFTWARE
SER A:20 , GDP A:201 , HOH A:395 , HOH A:396 , HOH A:434 , HOH A:449
BINDING SITE FOR RESIDUE MG A 202
3
AC3
SOFTWARE
SER A:180 , CMT A:181 , MET B:20 , LEU B:38 , ILE B:53 , GLN B:78 , TYR B:149
BINDING SITE FOR RESIDUE FAR A 2010
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036310 (E139K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036310
E
139
K
RHEB_HUMAN
Unclassified
---
A
E
139
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RAS (A:2-181)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAS
PS51421
small GTPase Ras family profile.
RHEB_HUMAN
2-184
1
A:2-181
[
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Exons
(13, 13)
Info
All Exons
Exon 1.1b (A:2-18)
Exon 1.5 (A:18-42)
Exon 1.6 (A:42-64)
Exon 1.7 (A:65-92)
Exon 1.8c (A:92-107)
Exon 1.8f (A:112-127)
Exon 1.9a (A:127-154)
Exon 1.10d (A:155-181 (gaps))
Exon 2.3a (B:4-17)
Exon 2.5b (B:17-47)
Exon 2.6a (B:47-89)
Exon 2.7 (B:89-124)
Exon 2.9b (B:124-150)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8c
06: Boundary 1.8c/1.8f
07: Boundary 1.8f/1.9a
08: Boundary 1.9a/1.10d
09: Boundary 1.10d/-
10: Boundary -/2.3a
11: Boundary 2.3a/2.5b
12: Boundary 2.5b/2.6a
13: Boundary 2.6a/2.7
14: Boundary 2.7/2.9b
15: Boundary 2.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000262187
1b
ENSE00001200523
chr7:
151217010-151216546
465
RHEB_HUMAN
1-18
18
1
A:2-18
17
1.5
ENST00000262187
5
ENSE00000730260
chr7:
151188100-151188029
72
RHEB_HUMAN
18-42
25
1
A:18-42
25
1.6
ENST00000262187
6
ENSE00000909920
chr7:
151181890-151181823
68
RHEB_HUMAN
42-64
23
1
A:42-64
23
1.7
ENST00000262187
7
ENSE00000730253
chr7:
151174501-151174419
83
RHEB_HUMAN
65-92
28
1
A:65-92
28
1.8c
ENST00000262187
8c
ENSE00001139595
chr7:
151168691-151168635
57
RHEB_HUMAN
92-111
20
1
A:92-107
16
1.8f
ENST00000262187
8f
ENSE00001200505
chr7:
151168527-151168480
48
RHEB_HUMAN
111-127
17
1
A:112-127
16
1.9a
ENST00000262187
9a
ENSE00001315618
chr7:
151167738-151167657
82
RHEB_HUMAN
127-154
28
1
A:127-154
28
1.10d
ENST00000262187
10d
ENSE00001321653
chr7:
151164297-151163098
1200
RHEB_HUMAN
155-184
30
1
A:155-181 (gaps)
27
2.3a
ENST00000287600
3a
ENSE00001829481
chr2:
232646019-232645775
245
PDE6D_HUMAN
1-17
17
1
B:4-17
14
2.5b
ENST00000287600
5b
ENSE00001029423
chr2:
232603898-232603810
89
PDE6D_HUMAN
17-47
31
1
B:17-47
31
2.6a
ENST00000287600
6a
ENSE00001029425
chr2:
232602848-232602723
126
PDE6D_HUMAN
47-89
43
1
B:47-89
43
2.7
ENST00000287600
7
ENSE00001029421
chr2:
232602002-232601897
106
PDE6D_HUMAN
89-124
36
1
B:89-124
36
2.9b
ENST00000287600
9b
ENSE00001872609
chr2:
232597743-232597135
609
PDE6D_HUMAN
124-150
27
1
B:124-150
27
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3t5gb_ (B:)
2a: SCOP_d3t5ga_ (A:)
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Protein Domains
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
RhoGDI-like
(34)
Protein domain
:
GMP-PDE delta
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3t5gb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
GTP-binding protein RheB
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d3t5ga_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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