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3T3S
Asym. Unit
Info
Asym.Unit (615 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (83 KB)
Biol.Unit 5 (83 KB)
Biol.Unit 6 (83 KB)
Biol.Unit 7 (83 KB)
Biol.Unit 8 (82 KB)
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(1)
Title
:
HUMAN CYTOCHROME P450 2A13 IN COMPLEX WITH PILOCARPINE
Authors
:
N. M. Devore, E. E. Scott
Date
:
25 Jul 11 (Deposition) - 07 Dec 11 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Cyp2A13, Cytochrome P450 2A13, P450 2A13, Heme Protein, Monooxygenase, Drug Metabolism, Xenobiotic Metabolism, Endoplasmic Reticulum, Membrane, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. M. Devore, K. M. Meneely, A. G. Bart, E. S. Stephens, K. P. Battaile, E. E. Scott
Structural Comparison Of Cytochromes P450 2A6, 2A13, And 2E With Pilocarpine.
Febs J. V. 279 1621 2012
[
close entry info
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: (3S,4R)-3-ETHYL-4-[(1-METHYL-1H-IM... (9PLa)
1b: (3S,4R)-3-ETHYL-4-[(1-METHYL-1H-IM... (9PLb)
1c: (3S,4R)-3-ETHYL-4-[(1-METHYL-1H-IM... (9PLc)
1d: (3S,4R)-3-ETHYL-4-[(1-METHYL-1H-IM... (9PLd)
1e: (3S,4R)-3-ETHYL-4-[(1-METHYL-1H-IM... (9PLe)
1f: (3S,4R)-3-ETHYL-4-[(1-METHYL-1H-IM... (9PLf)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
9PL
6
Ligand/Ion
(3S,4R)-3-ETHYL-4-[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]DIHYDROFURAN-2(3H)-ONE
2
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
9PL A:1 , ARG A:101 , VAL A:116 , ALA A:117 , ARG A:128 , LEU A:298 , ALA A:301 , GLY A:302 , THR A:305 , GLN A:360 , LEU A:366 , HIS A:372 , LEU A:395 , PRO A:431 , PHE A:432 , SER A:433 , ARG A:437 , CYS A:439 , PHE A:440
BINDING SITE FOR RESIDUE HEM A 500
02
AC2
SOFTWARE
PHE A:107 , PHE A:111 , PHE A:209 , ASN A:297 , PHE A:300 , ALA A:301 , THR A:305 , HEM A:500
BINDING SITE FOR RESIDUE 9PL A 1
03
AC3
SOFTWARE
9PL B:1 , ARG B:101 , ALA B:117 , ARG B:128 , ALA B:301 , THR B:305 , GLN B:360 , LEU B:370 , HIS B:372 , PRO B:431 , PHE B:432 , SER B:433 , ARG B:437 , CYS B:439
BINDING SITE FOR RESIDUE HEM B 500
04
AC4
SOFTWARE
PHE B:107 , PHE B:111 , ASN B:297 , PHE B:300 , ALA B:301 , THR B:305 , HEM B:500
BINDING SITE FOR RESIDUE 9PL B 1
05
AC5
SOFTWARE
9PL C:1 , ARG C:101 , VAL C:116 , ALA C:117 , ARG C:128 , ALA C:301 , THR C:305 , VAL C:306 , MET C:365 , LEU C:366 , HIS C:372 , LEU C:395 , PRO C:431 , PHE C:432 , SER C:433 , ARG C:437 , CYS C:439 , PHE C:440
BINDING SITE FOR RESIDUE HEM C 500
06
AC6
SOFTWARE
PHE C:107 , PHE C:209 , ASN C:297 , ALA C:301 , THR C:305 , LEU C:366 , HEM C:500
BINDING SITE FOR RESIDUE 9PL C 1
07
AC7
SOFTWARE
9PL D:1 , ARG D:101 , VAL D:116 , ALA D:117 , ARG D:128 , LEU D:298 , ALA D:301 , GLY D:302 , THR D:305 , VAL D:306 , GLN D:360 , LEU D:366 , LEU D:370 , HIS D:372 , LEU D:395 , PRO D:431 , SER D:433 , ARG D:437 , CYS D:439 , PHE D:440 , GLY D:441
BINDING SITE FOR RESIDUE HEM D 500
08
AC8
SOFTWARE
PHE D:111 , ALA D:117 , PHE D:118 , ASN D:297 , PHE D:300 , ALA D:301 , THR D:305 , HEM D:500
BINDING SITE FOR RESIDUE 9PL D 1
09
AC9
SOFTWARE
9PL E:1 , ARG E:101 , ALA E:117 , ARG E:128 , ALA E:301 , GLY E:302 , THR E:305 , THR E:309 , MET E:365 , LEU E:366 , HIS E:372 , PRO E:431 , SER E:433 , ARG E:437 , CYS E:439 , PHE E:440 , GLY E:441 , LEU E:444
BINDING SITE FOR RESIDUE HEM E 500
10
BC1
SOFTWARE
PHE E:107 , PHE E:111 , PHE E:118 , PHE E:209 , ASN E:297 , PHE E:300 , ALA E:301 , THR E:305 , HEM E:500
BINDING SITE FOR RESIDUE 9PL E 1
11
BC2
SOFTWARE
9PL F:1 , ARG F:101 , VAL F:116 , ALA F:117 , ALA F:301 , GLY F:302 , THR F:305 , VAL F:306 , HIS F:372 , PRO F:431 , PHE F:432 , SER F:433 , ARG F:437 , CYS F:439 , PHE F:440 , LEU F:444
BINDING SITE FOR RESIDUE HEM F 500
12
BC3
SOFTWARE
PHE F:107 , PHE F:111 , ALA F:117 , ASN F:297 , PHE F:300 , ALA F:301 , THR F:305 , HEM F:500
BINDING SITE FOR RESIDUE 9PL F 1
13
BC4
SOFTWARE
ARG G:101 , ALA G:117 , ARG G:128 , ALA G:301 , GLY G:302 , THR G:305 , GLN G:360 , LEU G:366 , HIS G:372 , LEU G:395 , PRO G:431 , PHE G:432 , SER G:433 , ARG G:437 , CYS G:439 , PHE G:440 , GLY G:441
BINDING SITE FOR RESIDUE HEM G 500
14
BC5
SOFTWARE
ARG H:101 , VAL H:116 , ARG H:128 , LEU H:298 , ALA H:301 , GLY H:302 , THR H:305 , LEU H:370 , HIS H:372 , PRO H:431 , PHE H:432 , SER H:433 , ARG H:437 , CYS H:439 , PHE H:440 , GLY H:441
BINDING SITE FOR RESIDUE HEM H 500
[
close Site info
]
SAPs(SNPs)/Variants
(6, 48)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018335 (R101Q, chain A/B/C/D/E/F/G/H, )
2: VAR_018337 (D158E, chain A/B/C/D/E/F/G/H, )
3: VAR_013835 (R257C, chain A/B/C/D/E/F/G/H, )
4: VAR_018356 (V323L, chain A/B/C/D/E/F/G/H, )
5: VAR_018338 (F453Y, chain A/B/C/D/E/F/G/H, )
6: VAR_018339 (R494C, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018335
R
101
Q
CP2AD_HUMAN
Polymorphism
---
A/B/C/D/E/F/G/H
R
101
Q
2
UniProt
VAR_018337
D
158
E
CP2AD_HUMAN
Polymorphism
112337232
A/B/C/D/E/F/G/H
D
158
E
3
UniProt
VAR_013835
R
257
C
CP2AD_HUMAN
Polymorphism
8192789
A/B/C/D/E/F/G/H
R
257
C
4
UniProt
VAR_018356
V
323
L
CP2AD_HUMAN
Polymorphism
---
A/B/C/D/E/F/G/H
V
323
L
5
UniProt
VAR_018338
F
453
Y
CP2AD_HUMAN
Polymorphism
---
A/B/C/D/E/F/G/H
F
453
Y
6
UniProt
VAR_018339
R
494
C
CP2AD_HUMAN
Polymorphism
138870349
A/B/C/D/E/F/G/H
R
494
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:432-441,B:432-441,C:432-441,D:43...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP2AD_HUMAN
432-441
8
A:432-441
B:432-441
C:432-441
D:432-441
E:432-441
F:432-441
G:432-441
H:432-441
[
close PROSITE info
]
Exons
(9, 72)
Info
All Exons
Exon 1.1a (A:31-60 | B:31-60 | C:31-60 | D:31...)
Exon 1.2 (A:61-115 | B:61-115 | C:61-115 | D...)
Exon 1.3 (A:115-165 | B:115-165 | C:115-165 ...)
Exon 1.4 (A:165-218 | B:165-218 | C:165-218 ...)
Exon 1.5 (A:219-277 | B:219-277 | C:219-277 ...)
Exon 1.6 (A:278-325 | B:278-325 | C:278-325 ...)
Exon 1.7 (A:325-387 | B:325-387 | C:325-387 ...)
Exon 1.8 (A:388-435 | B:388-435 | C:388-435 ...)
Exon 1.9b (A:435-494 | B:435-494 | C:435-494 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9b
10: Boundary 1.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000330436
1a
ENSE00001773270
chr19:
41594368-41594556
189
CP2AD_HUMAN
1-60
60
8
A:31-60
B:31-60
C:31-60
D:31-60
E:31-60
F:31-60
G:31-60
H:31-60
30
30
30
30
30
30
30
30
1.2
ENST00000330436
2
ENSE00002155113
chr19:
41594834-41594996
163
CP2AD_HUMAN
61-115
55
8
A:61-115
B:61-115
C:61-115
D:61-115
E:61-115
F:61-115
G:61-115
H:61-115
55
55
55
55
55
55
55
55
1.3
ENST00000330436
3
ENSE00001771471
chr19:
41595952-41596101
150
CP2AD_HUMAN
115-165
51
8
A:115-165
B:115-165
C:115-165
D:115-165
E:115-165
F:115-165
G:115-165
H:115-165
51
51
51
51
51
51
51
51
1.4
ENST00000330436
4
ENSE00001660507
chr19:
41596309-41596469
161
CP2AD_HUMAN
165-218
54
8
A:165-218
B:165-218
C:165-218
D:165-218
E:165-218
F:165-218
G:165-218
H:165-218
54
54
54
54
54
54
54
54
1.5
ENST00000330436
5
ENSE00001674446
chr19:
41597637-41597813
177
CP2AD_HUMAN
219-277
59
8
A:219-277
B:219-277
C:219-277
D:219-277
E:219-277
F:219-277
G:219-277
H:219-277
59
59
59
59
59
59
59
59
1.6
ENST00000330436
6
ENSE00001608489
chr19:
41599535-41599676
142
CP2AD_HUMAN
278-325
48
8
A:278-325
B:278-325
C:278-325
D:278-325
E:278-325
F:278-325
G:278-325
H:278-325
48
48
48
48
48
48
48
48
1.7
ENST00000330436
7
ENSE00001652331
chr19:
41600150-41600337
188
CP2AD_HUMAN
325-387
63
8
A:325-387
B:325-387
C:325-387
D:325-387
E:325-387
F:325-387
G:325-387
H:325-387
63
63
63
63
63
63
63
63
1.8
ENST00000330436
8
ENSE00001710361
chr19:
41600864-41601005
142
CP2AD_HUMAN
388-435
48
8
A:388-435
B:388-435
C:388-435
D:388-435
E:388-435
F:388-435
G:388-435
H:388-435
48
48
48
48
48
48
48
48
1.9b
ENST00000330436
9b
ENSE00001385067
chr19:
41601665-41602099
435
CP2AD_HUMAN
435-494
60
8
A:435-494
B:435-494
C:435-494
D:435-494
E:435-494
F:435-494
G:435-494
H:435-494
60
60
60
60
60
60
60
60
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3t3sa_ (A:)
1b: SCOP_d3t3sb_ (B:)
1c: SCOP_d3t3sc_ (C:)
1d: SCOP_d3t3sd_ (D:)
1e: SCOP_d3t3se_ (E:)
1f: SCOP_d3t3sf_ (F:)
1g: SCOP_d3t3sg_ (G:)
1h: SCOP_d3t3sh_ (H:)
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d3t3sa_
A:
1b
d3t3sb_
B:
1c
d3t3sc_
C:
1d
d3t3sd_
D:
1e
d3t3se_
E:
1f
d3t3sf_
F:
1g
d3t3sg_
G:
1h
d3t3sh_
H:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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