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3T2N
Asym. Unit
Info
Asym.Unit (499 KB)
Biol.Unit 1 (248 KB)
Biol.Unit 2 (250 KB)
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(1)
Title
:
HUMAN HEPSIN PROTEASE IN COMPLEX WITH THE FAB FRAGMENT OF AN INHIBITORY ANTIBODY
Authors
:
T. Koschubs, S. Dengl, H. Duerr, K. Kaluza, G. Georges, C. Hartl, S. Jenn M. Lanzendoerfer, J. Auer, A. Stern, K. -S. Huang, D. Kostrewa, S. Ries S. Hansen, U. Kohnert, P. Cramer, O. Mundigl
Date
:
22 Jul 11 (Deposition) - 28 Dec 11 (Release) - 25 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,H,I,L,M
Biol. Unit 1: A,H,L (1x)
Biol. Unit 2: B,I,M (1x)
Keywords
:
Type Ii Transmembrane Serine Protease, Srcr Domain, Substrates Include Pro-Hepsin, Pro-Hgf, Laminin-332, Transmembrane, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Koschubs, S. Dengl, H. Durr, K. Kaluza, G. Georges, C. Hartl, S. Jennewein, M. Lanzendorfer, J. Auer, A. Stern, K. S. Huang, K. Packman, U. Gubler, D. Kostrewa, S. Ries, S. Hansen, U. Kohnert, P. Cramer, O. Mundigl
Allosteric Antibody Inhibition Of Human Hepsin Protease.
Biochem. J. V. 442 483 2012
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
All Sites
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:167-405,B:169-405)
2: TRYPSIN_HIS (A:199-204,B:199-204)
3: TRYPSIN_SER (A:351-358,B:351-358)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
HEPS_HUMAN
163-405
2
A:167-405
B:169-405
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
HEPS_HUMAN
199-204
2
A:199-204
B:199-204
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
HEPS_HUMAN
347-358
2
A:351-358
B:351-358
[
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Exons
(10, 20)
Info
All Exons
Exon 1.4 (A:48-54 | B:48-54)
Exon 1.5 (A:54-97 | B:54-97)
Exon 1.6 (A:97-138 | B:97-138)
Exon 1.7 (A:138-152 | B:138-152)
Exon 1.8 (A:152-207 (gaps) | B:152-207 (gaps...)
Exon 1.9 (A:207-271 | B:207-271)
Exon 1.10 (A:271-296 | B:271-296)
Exon 1.11 (A:307-342 | B:307-342)
Exon 1.12 (A:351-405 (gaps) | B:351-405 (gaps...)
Exon 1.13 (A:406-417 | B:406-416)
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000392226
1
ENSE00001114495
chr19:
35531410-35531449
40
HEPS_HUMAN
-
0
0
-
-
1.2a
ENST00000392226
2a
ENSE00001638672
chr19:
35532626-35532776
151
HEPS_HUMAN
-
0
0
-
-
1.2c
ENST00000392226
2c
ENSE00001669183
chr19:
35533357-35533426
70
HEPS_HUMAN
1-6
6
0
-
-
1.3
ENST00000392226
3
ENSE00000953257
chr19:
35540194-35540295
102
HEPS_HUMAN
6-40
35
0
-
-
1.4
ENST00000392226
4
ENSE00001253027
chr19:
35540379-35540420
42
HEPS_HUMAN
40-54
15
2
A:48-54
B:48-54
7
7
1.5
ENST00000392226
5
ENSE00001253082
chr19:
35550577-35550706
130
HEPS_HUMAN
54-97
44
2
A:54-97
B:54-97
44
44
1.6
ENST00000392226
6
ENSE00000953258
chr19:
35550778-35550900
123
HEPS_HUMAN
97-138
42
2
A:97-138
B:97-138
42
42
1.7
ENST00000392226
7
ENSE00000862744
chr19:
35551033-35551073
41
HEPS_HUMAN
138-152
15
2
A:138-152
B:138-152
15
15
1.8
ENST00000392226
8
ENSE00000700403
chr19:
35551251-35551416
166
HEPS_HUMAN
152-207
56
2
A:152-207 (gaps)
B:152-207 (gaps)
56
56
1.9
ENST00000392226
9
ENSE00000953259
chr19:
35551531-35551721
191
HEPS_HUMAN
207-271
65
2
A:207-271
B:207-271
65
65
1.10
ENST00000392226
10
ENSE00000700401
chr19:
35556154-35556249
96
HEPS_HUMAN
271-303
33
2
A:271-296
B:271-296
26
26
1.11
ENST00000392226
11
ENSE00000700399
chr19:
35556443-35556585
143
HEPS_HUMAN
303-350
48
2
A:307-342
B:307-342
36
36
1.12
ENST00000392226
12
ENSE00001253074
chr19:
35556772-35556936
165
HEPS_HUMAN
351-405
55
2
A:351-405 (gaps)
B:351-405 (gaps)
55
55
1.13
ENST00000392226
13
ENSE00001114496
chr19:
35557153-35557475
323
HEPS_HUMAN
406-417
12
2
A:406-417
B:406-416
12
11
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3t2nl1 (L:1-108)
1b: SCOP_d3t2nm1 (M:1-108)
2a: SCOP_d3t2nl2 (L:109-209)
2b: SCOP_d3t2nm2 (M:109-210)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3t2nl1
L:1-108
1b
d3t2nm1
M:1-108
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3t2nl2
L:109-209
2b
d3t2nm2
M:109-210
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Asym.Unit (499 KB)
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