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3T0U
Biol. Unit 3
Info
Asym.Unit (733 KB)
Biol.Unit 1 (484 KB)
Biol.Unit 2 (486 KB)
Biol.Unit 3, α-C (1.4 MB)
Biol.Unit 3 (1.4 MB)
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(1)
Title
:
HANSENULA POLYMORPHA COPPER AMINE OXIDASE-1 IN COMPLEX WITH CU(I)
Authors
:
V. J. Klema, C. M. Wilmot
Date
:
20 Jul 11 (Deposition) - 02 May 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Biol. Unit 3: A,B,C (2x)
Keywords
:
Oxidoreductase, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. J. Klema, B. J. Johnson, J. P. Klinman, C. M. Wilmot
The Precursor Form Of Hansenula Polymorpha Copper Amine Oxidase 1 In Complex With Cui And Coii.
Acta Crystallogr. , Sect. F V. 68 501 2012
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Hetero Components
(3, 46)
Info
All Hetero Components
1a: COPPER (I) ION (CU1a)
1b: COPPER (I) ION (CU1b)
1c: COPPER (I) ION (CU1c)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU1
6
Ligand/Ion
COPPER (I) ION
2
GOL
38
Ligand/Ion
GLYCEROL
3
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:405 , LEU A:425 , HIS A:456 , HIS A:458 , HIS A:624
BINDING SITE FOR RESIDUE CU1 A 801
02
AC2
SOFTWARE
HIS A:23 , TYR A:64 , LYS A:68 , LYS A:265 , ASP A:280 , HOH A:1162
BINDING SITE FOR RESIDUE GOL A 802
03
AC3
SOFTWARE
PRO A:484 , TYR A:485 , TYR A:499 , HOH A:1413
BINDING SITE FOR RESIDUE GOL A 803
04
AC4
SOFTWARE
TRP A:67 , LYS A:68
BINDING SITE FOR RESIDUE GOL A 804
05
AC5
SOFTWARE
LYS A:393 , ARG A:420 , ASP A:422 , ARG A:424 , HOH A:969 , HOH A:1158 , HOH A:1300 , HOH A:1516 , GLY B:371
BINDING SITE FOR RESIDUE GOL A 805
06
AC6
SOFTWARE
LYS A:561 , SER A:591 , ASP A:593 , HOH A:1241
BINDING SITE FOR RESIDUE GOL A 806
07
AC7
SOFTWARE
TYR B:405 , LEU B:425 , HIS B:456 , HIS B:458 , HIS B:624
BINDING SITE FOR RESIDUE CU1 B 801
08
AC8
SOFTWARE
TYR B:534 , HOH B:1001 , HOH B:1461 , GLN C:66 , GLN C:70 , GLY C:72
BINDING SITE FOR RESIDUE GOL B 802
09
AC9
SOFTWARE
HIS B:23 , TYR B:64 , LYS B:68 , LYS B:265 , ASP B:280 , HOH B:1065 , HOH B:1692
BINDING SITE FOR RESIDUE GOL B 803
10
BC1
SOFTWARE
HIS B:218 , LYS B:219
BINDING SITE FOR RESIDUE PO4 B 804
11
BC2
SOFTWARE
TRP C:67
BINDING SITE FOR RESIDUE GOL B 805
12
BC3
SOFTWARE
LYS B:214 , VAL B:215 , ASP B:436 , HOH B:1307
BINDING SITE FOR RESIDUE GOL B 806
13
BC4
SOFTWARE
PRO A:442 , PRO B:484 , TYR B:485 , HOH B:1371 , HOH B:1424
BINDING SITE FOR RESIDUE GOL B 807
14
BC5
SOFTWARE
LYS B:561 , SER B:591 , HOH B:1392 , LYS C:561 , ASP C:593 , GOL C:805 , HOH C:1022
BINDING SITE FOR RESIDUE GOL B 808
15
BC6
SOFTWARE
TYR C:405 , HIS C:456 , HIS C:458 , HIS C:624
BINDING SITE FOR RESIDUE CU1 C 801
16
BC7
SOFTWARE
PRO C:442 , PRO C:484 , TYR C:485 , HOH C:1424 , HOH C:1656
BINDING SITE FOR RESIDUE GOL C 802
17
BC8
SOFTWARE
HOH A:1432 , ARG C:61 , LYS C:62 , GLN C:70 , ASP C:471 , ASP C:613 , HOH C:1648 , HOH C:1783 , HOH C:1798
BINDING SITE FOR RESIDUE GOL C 803
18
BC9
SOFTWARE
GLY C:371 , LYS C:393 , VAL C:412 , ASP C:422 , ARG C:424 , HOH C:923 , HOH C:1110 , HOH C:1765
BINDING SITE FOR RESIDUE GOL C 804
19
CC1
SOFTWARE
LYS B:561 , ASP B:593 , GOL B:808 , LYS C:561 , SER C:591 , HOH C:1022 , HOH C:1333
BINDING SITE FOR RESIDUE GOL C 805
20
CC2
SOFTWARE
HIS C:23 , TYR C:64 , LYS C:68 , LYS C:265 , ASP C:280 , HOH C:1092
BINDING SITE FOR RESIDUE GOL C 806
21
CC3
SOFTWARE
HIS C:218 , LYS C:219 , TYR C:448 , TYR C:534
BINDING SITE FOR RESIDUE GOL C 807
22
CC4
SOFTWARE
LYS C:214 , VAL C:215 , GLY C:435 , ASP C:436
BINDING SITE FOR RESIDUE GOL C 808
23
CC5
SOFTWARE
GLY C:142 , PRO C:144 , GLU C:147 , TYR C:177 , HOH C:1258
BINDING SITE FOR RESIDUE GOL C 809
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:394-407,B:394-407,C:394-407)
2: COPPER_AMINE_OXID_2 (A:619-632,B:619-632,C:619-632)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
AMO_PICAN
394-407
6
A:394-407
B:394-407
C:394-407
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
AMO_PICAN
619-632
6
A:619-632
B:619-632
C:619-632
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Info
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (733 KB)
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Biol.Unit 1 (484 KB)
Header - Biol.Unit 1
Biol.Unit 2 (486 KB)
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Biol.Unit 3 (1.4 MB)
Header - Biol.Unit 3
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