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3T0P
Asym. Unit
Info
Asym.Unit (262 KB)
Biol.Unit 1 (254 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE DNA POLYMERASE III BETA SUBUNIT (EUBREC_0002; ERE_29750) FROM EUBACTERIUM RECTALE ATCC 33656 AT 2.26 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
20 Jul 11 (Deposition) - 10 Aug 11 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dna Clamp, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Dna Polymerase Iii Beta Subunit (Eubrec_0002; Ere_29750) From Eubacterium Rectale Atcc 33656 At 2. 26 A Resolution
To Be Published
[
close entry info
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Hetero Components
(5, 51)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
5a: R-1,2-PROPANEDIOL (PGRa)
5b: R-1,2-PROPANEDIOL (PGRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
5
PGR
2
Ligand/Ion
R-1,2-PROPANEDIOL
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:249 , SER A:250 , TYR A:252 , LYS A:350 , HOH A:644
BINDING SITE FOR RESIDUE PGR A 373
02
AC2
SOFTWARE
THR A:133 , VAL A:137 , GLN A:140
BINDING SITE FOR RESIDUE ACT A 376
03
AC3
SOFTWARE
ASP A:307
BINDING SITE FOR RESIDUE ACT A 378
04
AC4
SOFTWARE
ASN A:47 , MSE A:49 , GLU A:50 , GLY A:52 , VAL A:233 , ARG A:235
BINDING SITE FOR RESIDUE EDO A 382
05
AC5
SOFTWARE
LYS A:19 , ALA A:20 , VAL A:21 , PRO A:22 , ASP A:48 , LYS A:197 , EDO A:388
BINDING SITE FOR RESIDUE EDO A 383
06
AC6
SOFTWARE
GLU A:54 , ASN A:229 , THR A:231
BINDING SITE FOR RESIDUE EDO A 384
07
AC7
SOFTWARE
PRO A:119 , TYR A:120 , VAL A:121 , ARG A:123
BINDING SITE FOR RESIDUE EDO A 385
08
AC8
SOFTWARE
GLU A:160 , ARG A:167
BINDING SITE FOR RESIDUE EDO A 386
09
AC9
SOFTWARE
THR A:23 , GLU A:201 , LYS A:204 , EDO A:383 , HOH A:400 , HOH A:460
BINDING SITE FOR RESIDUE EDO A 388
10
BC1
SOFTWARE
ASP A:251 , TYR A:252
BINDING SITE FOR RESIDUE EDO A 389
11
BC2
SOFTWARE
ASN A:285 , ILE A:315 , MSE A:316
BINDING SITE FOR RESIDUE EDO A 391
12
BC3
SOFTWARE
GLU A:226 , GLU A:228 , ASP B:213
BINDING SITE FOR RESIDUE EDO A 392
13
BC4
SOFTWARE
PHE A:132 , GLU A:136 , ARG A:139 , ASP A:332
BINDING SITE FOR RESIDUE EDO A 394
14
BC5
SOFTWARE
LYS A:243 , GLN A:246
BINDING SITE FOR RESIDUE EDO A 397
15
BC6
SOFTWARE
ASP B:251 , TYR B:252 , ASP B:253 , HOH B:642
BINDING SITE FOR RESIDUE PGR B 374
16
BC7
SOFTWARE
ASN B:47 , MSE B:49 , GLU B:50 , LEU B:51 , GLY B:52 , PRO B:119 , HIS B:222 , VAL B:233
BINDING SITE FOR RESIDUE ACT B 375
17
BC8
SOFTWARE
LYS B:19 , VAL B:21 , PRO B:22 , ASP B:48 , LYS B:197 , GLU B:201
BINDING SITE FOR RESIDUE ACT B 377
18
BC9
SOFTWARE
GLU B:262
BINDING SITE FOR RESIDUE ACT B 379
19
CC1
SOFTWARE
TYR B:339 , LYS B:350
BINDING SITE FOR RESIDUE EDO B 380
20
CC2
SOFTWARE
ILE B:4 , CYS B:5 , SER B:6
BINDING SITE FOR RESIDUE EDO B 381
21
CC3
SOFTWARE
GLU B:54 , ASN B:229 , THR B:231 , HOH B:603
BINDING SITE FOR RESIDUE EDO B 387
22
CC4
SOFTWARE
GLU B:160 , GLU B:162 , ARG B:167
BINDING SITE FOR RESIDUE EDO B 390
23
CC5
SOFTWARE
LYS B:104 , HOH B:430 , HOH B:471
BINDING SITE FOR RESIDUE EDO B 393
24
CC6
SOFTWARE
GLN B:200 , LYS B:204 , HOH B:410
BINDING SITE FOR RESIDUE EDO B 395
25
CC7
SOFTWARE
ARG B:139 , HOH B:536
BINDING SITE FOR RESIDUE EDO B 396
26
CC8
SOFTWARE
ARG B:123
BINDING SITE FOR RESIDUE CL B 398
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
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)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (262 KB)
Header - Asym.Unit
Biol.Unit 1 (254 KB)
Header - Biol.Unit 1
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