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3T0E
Asym. Unit
Info
Asym.Unit (416 KB)
Biol.Unit 1 (407 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLETE TERNARY COMPLEX OF T CELL RECEPTOR, PEPTIDE-MHC AND CD4
Authors
:
Y. Yin, R. A. Mariuzza
Date
:
20 Jul 11 (Deposition) - 07 Mar 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Cd4, T Cell Receptor, Tcr, Hla Class Ii, Mhc, Autoimmunity, T Cell Activation, Immunoglobulin Fold, Immune System, Membrane
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Yin, X. X. Wang, R. A. Mariuzza
Crystal Structure Of A Complete Ternary Complex Of T-Cell Receptor, Peptide-Mhc, And Cd4.
Proc. Natl. Acad. Sci. Usa V. 109 5405 2012
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016673 (D86S, chain B, )
02: VAR_016674 (L96I, chain B, )
03: VAR_016675 (Q99D, chain B, )
04: VAR_016676 (K100E, chain B, )
05: VAR_016677 (K100R, chain B, )
06: VAR_016678 (A103E, chain B, )
07: VAR_016679 (G115V, chain B, )
08: VAR_023459 (K166E, chain E, )
09: VAR_023460 (F202S, chain E, )
10: VAR_003906 (R240W, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016673
D
86
S
2B14_HUMAN
Polymorphism
---
B
D
86
S
02
UniProt
VAR_016674
L
96
I
2B14_HUMAN
Polymorphism
---
B
L
96
I
03
UniProt
VAR_016675
Q
99
D
2B14_HUMAN
Polymorphism
---
B
Q
99
D
04
UniProt
VAR_016676
K
100
E
2B14_HUMAN
Polymorphism
---
B
K
100
E
05
UniProt
VAR_016677
K
100
R
2B14_HUMAN
Polymorphism
---
B
K
100
R
06
UniProt
VAR_016678
A
103
E
2B14_HUMAN
Polymorphism
---
B
A
103
E
07
UniProt
VAR_016679
G
115
V
2B14_HUMAN
Polymorphism
---
B
G
115
V
08
UniProt
VAR_023459
K
191
E
CD4_HUMAN
Polymorphism
28917504
E
K
166
E
09
UniProt
VAR_023460
F
227
S
CD4_HUMAN
Polymorphism
11064419
E
F
202
S
10
UniProt
VAR_003906
R
265
W
CD4_HUMAN
Polymorphism
28919570
E
R
240
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:161-167,B:200-206)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
DRA_HUMAN
186-192
1
A:161-167
2B14_HUMAN
200-206
1
B:200-206
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Exons
(9, 9)
Info
All Exons
Exon 1.3 (E:1-47)
Exon 1.4 (E:47-100)
Exon 1.5 (E:100-178)
Exon 1.6b (E:178-294)
Exon 1.7 (E:294-361)
Exon 1.8 (E:361-365)
Exon 2.7b (A:4-85)
Exon 2.8c (A:85-179)
Exon 2.9a (A:179-181)
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6b
05: Boundary 1.6b/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 2.6a/2.7b
09: Boundary 2.7b/2.8c
10: Boundary 2.8c/2.9a
11: Boundary 2.9a/2.10b
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000011653
1
ENSE00001303311
chr12:
6898651-6898828
178
CD4_HUMAN
-
0
0
-
-
1.2
ENST00000011653
2
ENSE00000866954
chr12:
6909238-6909353
116
CD4_HUMAN
1-17
17
0
-
-
1.3
ENST00000011653
3
ENSE00000716042
chr12:
6909473-6909637
165
CD4_HUMAN
17-72
56
1
E:1-47
47
1.4
ENST00000011653
4
ENSE00000716044
chr12:
6923308-6923466
159
CD4_HUMAN
72-125
54
1
E:47-100
54
1.5
ENST00000011653
5
ENSE00000716046
chr12:
6923925-6924158
234
CD4_HUMAN
125-203
79
1
E:100-178
79
1.6b
ENST00000011653
6b
ENSE00000716048
chr12:
6925222-6925569
348
CD4_HUMAN
203-319
117
1
E:178-294
117
1.7
ENST00000011653
7
ENSE00000716051
chr12:
6926296-6926496
201
CD4_HUMAN
319-386
68
1
E:294-361
68
1.8
ENST00000011653
8
ENSE00000716053
chr12:
6927587-6927708
122
CD4_HUMAN
386-426
41
1
E:361-365
5
1.9
ENST00000011653
9
ENSE00000716057
chr12:
6928013-6928080
68
CD4_HUMAN
427-449
23
0
-
-
1.10
ENST00000011653
10
ENSE00001182623
chr12:
6928465-6929976
1512
CD4_HUMAN
449-458
10
0
-
-
2.6a
ENST00000383259
6a
ENSE00001839042
HSCHR6_MHC_QBL:32365090-32365280
191
DRA_HUMAN
1-28
28
0
-
-
2.7b
ENST00000383259
7b
ENSE00001719010
HSCHR6_MHC_QBL:32367694-32367939
246
DRA_HUMAN
28-110
83
1
A:4-85
82
2.8c
ENST00000383259
8c
ENSE00001737588
HSCHR6_MHC_QBL:32368431-32368712
282
DRA_HUMAN
110-204
95
1
A:85-179
95
2.9a
ENST00000383259
9a
ENSE00001770912
HSCHR6_MHC_QBL:32369002-32369167
166
DRA_HUMAN
204-254
51
1
A:179-181
3
2.10b
ENST00000383259
10b
ENSE00001925700
HSCHR6_MHC_QBL:32369906-32370300
395
DRA_HUMAN
-
0
0
-
-
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Asym.Unit (416 KB)
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