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3SYT
Asym. Unit
Info
Asym.Unit (436 KB)
Biol.Unit 1 (841 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUTAMINE-DEPENDENT NAD+ SYNTHETASE FROM M. TUBERCULOSIS BOUND TO AMP/PPI, NAD+, AND GLUTAMATE
Authors
:
W. Chuenchor, B. Gerratana
Date
:
18 Jul 11 (Deposition) - 11 Apr 12 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Keywords
:
Glutamine-Amidotransferase, Glutaminase, Glutamine-Dependent Nad+ Synthetase, Ligase, Ammonia Tunneling, Atp Binding, Nad, Nucleotide Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Chuenchor, T. I. Doukov, M. Resto, A. Chang, B. Gerratana
Regulation Of The Intersubunit Ammonia Tunnel In Mycobacterium Tuberculosis Glutamine-Dependent Nad+ Synthetase.
Biochem. J. V. 443 417 2012
[
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
2c: GLUTAMIC ACID (GLUc)
2d: GLUTAMIC ACID (GLUd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
4b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
4c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
4d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
5a: PYROPHOSPHATE 2- (POPa)
5b: PYROPHOSPHATE 2- (POPb)
5c: PYROPHOSPHATE 2- (POPc)
5d: PYROPHOSPHATE 2- (POPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
4
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
GLU
4
Mod. Amino Acid
GLUTAMIC ACID
3
GOL
2
Ligand/Ion
GLYCEROL
4
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
5
POP
4
Ligand/Ion
PYROPHOSPHATE 2-
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:127 , ARG A:128 , CYS A:176 , GLU A:177 , PHE A:180 , SER A:203 , ARG A:209 , HOH A:702
BINDING SITE FOR RESIDUE GLU A 683
02
AC2
SOFTWARE
TYR B:127 , ARG B:128 , PHE B:130 , CYS B:176 , GLU B:177 , PHE B:180 , SER B:203 , ARG B:209
BINDING SITE FOR RESIDUE GLU B 683
03
AC3
SOFTWARE
TYR C:127 , ARG C:128 , PHE C:130 , CYS C:176 , GLU C:177 , PHE C:180 , SER C:203 , ARG C:209
BINDING SITE FOR RESIDUE GLU C 683
04
AC4
SOFTWARE
TYR D:127 , CYS D:176 , GLU D:177 , PHE D:180 , SER D:203 , ARG D:209 , HOH D:804
BINDING SITE FOR RESIDUE GLU D 683
05
AC5
SOFTWARE
TYR C:58 , SER C:59 , ILE C:60 , GLU C:61 , PHE C:130 , TYR C:131 , GLU C:132 , GLN C:135
BINDING SITE FOR RESIDUE GOL C 684
06
AC6
SOFTWARE
VAL A:452 , ASN A:456 , GLU A:485 , TRP A:490 , SER A:491 , THR A:492 , TYR A:493 , ASP A:497 , PHE A:631 , PHE A:634 , LYS A:635 , SER A:661 , AMP A:681 , HOH A:757 , HOH A:784 , HOH A:785 , ARG D:354 , LEU D:358 , ASN D:471 , GLY D:475 , ILE D:476 , HIS D:501
BINDING SITE FOR RESIDUE NAD A 680
07
AC7
SOFTWARE
GLY A:366 , VAL A:367 , SER A:368 , SER A:373 , PHE A:397 , LEU A:399 , ARG A:462 , THR A:480 , NAD A:680 , POP A:682
BINDING SITE FOR RESIDUE AMP A 681
08
AC8
SOFTWARE
SER A:368 , GLY A:370 , LEU A:371 , ASP A:372 , SER A:373 , AMP A:681 , HOH A:791
BINDING SITE FOR RESIDUE POP A 682
09
AC9
SOFTWARE
TYR A:58 , SER A:59 , GLU A:61 , GLU A:129 , PHE A:130 , TYR A:131 , GLU A:132 , GLN A:135
BINDING SITE FOR RESIDUE GOL A 684
10
BC1
SOFTWARE
VAL B:452 , ASN B:456 , GLU B:485 , TRP B:490 , SER B:491 , THR B:492 , TYR B:493 , ASP B:497 , PHE B:631 , PHE B:634 , LYS B:635 , SER B:661 , AMP B:681 , HOH B:722 , HOH B:762 , HOH B:772 , HOH B:774 , ARG C:354 , LEU C:358 , ASN C:471 , GLY C:475 , ILE C:476 , HIS C:501
BINDING SITE FOR RESIDUE NAD B 680
11
BC2
SOFTWARE
GLY B:366 , VAL B:367 , SER B:368 , SER B:373 , PHE B:397 , LEU B:399 , ARG B:462 , THR B:480 , NAD B:680 , POP B:682
BINDING SITE FOR RESIDUE AMP B 681
12
BC3
SOFTWARE
SER B:368 , GLY B:370 , LEU B:371 , ASP B:372 , SER B:373 , AMP B:681
BINDING SITE FOR RESIDUE POP B 682
13
BC4
SOFTWARE
ARG B:354 , LEU B:358 , ASN B:471 , GLY B:475 , ILE B:476 , HIS B:501 , VAL C:452 , ASN C:456 , GLU C:485 , TRP C:490 , SER C:491 , THR C:492 , TYR C:493 , ASP C:497 , PHE C:631 , PHE C:634 , LYS C:635 , SER C:661 , AMP C:681 , HOH C:722 , HOH C:781
BINDING SITE FOR RESIDUE NAD C 680
14
BC5
SOFTWARE
GLY C:366 , VAL C:367 , SER C:368 , PHE C:397 , ALA C:398 , LEU C:399 , ARG C:462 , THR C:480 , NAD C:680 , POP C:682
BINDING SITE FOR RESIDUE AMP C 681
15
BC6
SOFTWARE
SER C:368 , GLY C:370 , LEU C:371 , ASP C:372 , SER C:373 , THR C:480 , AMP C:681
BINDING SITE FOR RESIDUE POP C 682
16
BC7
SOFTWARE
ARG A:354 , LEU A:358 , ASN A:471 , GLY A:475 , ILE A:476 , HIS A:501 , VAL D:452 , ASN D:456 , GLU D:485 , TRP D:490 , SER D:491 , THR D:492 , TYR D:493 , ASP D:497 , PHE D:631 , PHE D:634 , LYS D:635 , SER D:661 , AMP D:681 , HOH D:704 , HOH D:724 , HOH D:775
BINDING SITE FOR RESIDUE NAD D 680
17
BC8
SOFTWARE
GLY D:366 , VAL D:367 , SER D:368 , SER D:373 , PHE D:397 , ALA D:398 , LEU D:399 , ARG D:462 , THR D:480 , NAD D:680 , POP D:682
BINDING SITE FOR RESIDUE AMP D 681
18
BC9
SOFTWARE
SER D:368 , GLY D:370 , LEU D:371 , ASP D:372 , SER D:373 , AMP D:681
BINDING SITE FOR RESIDUE POP D 682
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CN_HYDROLASE (A:12-276,B:12-276,C:12-276,D:12-27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CN_HYDROLASE
PS50263
Carbon-nitrogen hydrolase domain profile.
NADE_MYCTO
12-276
4
A:12-276
B:12-276
C:12-276
D:12-276
NADE_MYCTU
12-276
4
A:12-276
B:12-276
C:12-276
D:12-276
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Info
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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