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3SXX
Biol. Unit 1
Info
Asym.Unit (1.5 MB)
Biol.Unit 1 (530 KB)
Biol.Unit 2 (525 KB)
Biol.Unit 3 (524 KB)
Biol.Unit 4, α-C (1.5 MB)
Biol.Unit 4 (1.5 MB)
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(1)
Title
:
HANSENULA POLYMORPHA COPPER AMINE OXIDASE-1 IN COMPLEX WITH CO(II)
Authors
:
V. J. Klema, C. M. Wilmot
Date
:
15 Jul 11 (Deposition) - 02 May 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.27
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Oxidoreductase, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. J. Klema, B. J. Johnson, J. P. Klinman, C. M. Wilmot
The Precursor Form Of Hansenula Polymorpha Copper Amine Oxidase 1 In Complex With Cui And Coii.
Acta Crystallogr. , Sect. F V. 68 501 2012
[
close entry info
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
1f: COBALT (II) ION (COf)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2ac: GLYCEROL (GOLac)
2ad: GLYCEROL (GOLad)
2ae: GLYCEROL (GOLae)
2af: GLYCEROL (GOLaf)
2ag: GLYCEROL (GOLag)
2ah: GLYCEROL (GOLah)
2ai: GLYCEROL (GOLai)
2aj: GLYCEROL (GOLaj)
2ak: GLYCEROL (GOLak)
2al: GLYCEROL (GOLal)
2am: GLYCEROL (GOLam)
2an: GLYCEROL (GOLan)
2ao: GLYCEROL (GOLao)
2ap: GLYCEROL (GOLap)
2aq: GLYCEROL (GOLaq)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
-1
Ligand/Ion
COBALT (II) ION
2
GOL
18
Ligand/Ion
GLYCEROL
3
PO4
-1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC9 (SOFTWARE)
22: DC1 (SOFTWARE)
23: DC2 (SOFTWARE)
24: DC3 (SOFTWARE)
25: DC9 (SOFTWARE)
26: EC5 (SOFTWARE)
27: EC6 (SOFTWARE)
28: FC4 (SOFTWARE)
29: FC5 (SOFTWARE)
30: FC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:405 , LEU A:425 , HIS A:456 , HIS A:458 , HIS A:624 , HOH A:1628 , HOH A:1736
BINDING SITE FOR RESIDUE CO A 801
02
AC2
SOFTWARE
ARG A:213 , LYS A:214 , VAL A:215 , GLY A:435 , ASP A:436 , ASN A:450 , HOH A:1031 , HOH A:1083
BINDING SITE FOR RESIDUE GOL A 802
03
AC3
SOFTWARE
GLU A:368 , LYS A:393 , TYR A:410 , VAL A:412 , ARG A:420 , ASP A:422 , ARG A:424 , HOH A:1007 , HOH A:1431 , HOH A:1458 , HOH A:1650 , GLY B:371
BINDING SITE FOR RESIDUE GOL A 803
04
AC4
SOFTWARE
ARG A:61 , ILE A:65 , ASP A:471 , ASP A:613 , HOH A:1303 , HOH A:1326 , HOH A:1589
BINDING SITE FOR RESIDUE GOL A 804
05
AC5
SOFTWARE
GLN A:66 , GLN A:70 , GLY A:72 , TYR E:448 , TYR F:534 , HOH F:912 , HOH F:1875
BINDING SITE FOR RESIDUE GOL A 805
06
AC6
SOFTWARE
PRO A:484 , TYR A:485 , TYR A:499 , HOH A:1447 , HOH A:1647 , PRO B:442
BINDING SITE FOR RESIDUE GOL A 806
07
AC7
SOFTWARE
HIS A:23 , TYR A:64 , LYS A:68 , VAL A:258 , LYS A:265 , PHE A:266 , ASP A:280 , HOH A:920 , HOH A:1490
BINDING SITE FOR RESIDUE GOL A 807
08
AC8
SOFTWARE
HIS A:218 , LYS A:219 , TYR A:448 , HOH A:1630 , TYR B:534
BINDING SITE FOR RESIDUE GOL A 808
09
AC9
SOFTWARE
ARG A:57 , GLU A:93 , GLY A:94 , GLU A:105 , ARG A:107 , HOH A:1763 , HOH A:1765
BINDING SITE FOR RESIDUE GOL A 809
10
BC1
SOFTWARE
TYR A:160 , LEU A:558 , LYS A:561 , SER A:591 , HOH A:1903 , LYS F:561 , ASP F:593 , GOL F:808 , HOH F:1087
BINDING SITE FOR RESIDUE GOL A 810
11
BC2
SOFTWARE
GLY A:142 , PRO A:144 , GLU A:147 , TYR A:177 , LYS A:217 , HOH A:1295 , HOH E:1647
BINDING SITE FOR RESIDUE GOL A 811
12
BC3
SOFTWARE
TYR B:405 , LEU B:425 , HIS B:456 , HIS B:458 , HIS B:624 , HOH B:1629 , HOH B:1736
BINDING SITE FOR RESIDUE CO B 801
13
BC4
SOFTWARE
ARG B:213 , LYS B:214 , VAL B:215 , GLY B:435 , ASP B:436 , ASN B:450 , HOH B:1025 , HOH B:1663
BINDING SITE FOR RESIDUE GOL B 802
14
BC5
SOFTWARE
GLU B:368 , LYS B:393 , TYR B:410 , ASP B:422 , HOH B:1005 , HOH B:1125 , HOH B:1462
BINDING SITE FOR RESIDUE GOL B 803
15
BC6
SOFTWARE
PRO A:442 , PRO B:484 , TYR B:485 , TYR B:499 , HOH B:1501 , HOH B:1826
BINDING SITE FOR RESIDUE GOL B 804
16
BC7
SOFTWARE
HIS B:23 , TYR B:64 , LYS B:68 , VAL B:258 , LYS B:265 , PHE B:266 , HIS B:267 , ASP B:280 , HOH B:1211
BINDING SITE FOR RESIDUE GOL B 805
17
BC8
SOFTWARE
HIS B:218 , LYS B:219 , HOH B:1901
BINDING SITE FOR RESIDUE GOL B 806
18
BC9
SOFTWARE
TYR B:160 , LEU B:558 , LYS B:561 , SER B:591 , HOH B:1484 , HOH B:1712 , LYS C:561 , ASP C:593 , GOL C:809 , HOH C:1147
BINDING SITE FOR RESIDUE GOL B 807
19
CC1
SOFTWARE
GLY B:142 , PRO B:144 , GLU B:147 , TYR B:177 , HOH B:1327 , HOH D:1360
BINDING SITE FOR RESIDUE GOL B 808
20
CC2
SOFTWARE
PHE B:310 , HOH B:1069 , HOH B:1162 , HOH B:1281 , HOH B:1395 , HOH B:1792 , HOH B:1840 , GLY C:594 , HOH C:1160
BINDING SITE FOR RESIDUE GOL B 809
21
CC9
SOFTWARE
GLN B:66 , GLN B:70 , GLY B:72 , TYR C:534 , THR C:650 , HOH C:1032 , HOH C:1265
BINDING SITE FOR RESIDUE GOL C 807
22
DC1
SOFTWARE
GLY B:594 , HOH B:1154 , ARG C:163 , PHE C:310 , HOH C:1113 , HOH C:1181 , HOH C:1274 , HOH C:1367 , HOH C:1837
BINDING SITE FOR RESIDUE GOL C 808
23
DC2
SOFTWARE
LYS B:561 , ASP B:593 , GOL B:807 , LEU C:558 , LYS C:561 , SER C:591 , HOH C:1147 , HOH C:1668
BINDING SITE FOR RESIDUE GOL C 809
24
DC3
SOFTWARE
TRP B:67 , LYS B:68
BINDING SITE FOR RESIDUE GOL C 810
25
DC9
SOFTWARE
HOH B:1152 , HOH B:1742 , HOH C:1101 , HIS D:218 , LYS D:219 , TYR D:448
BINDING SITE FOR RESIDUE GOL D 806
26
EC5
SOFTWARE
ASN A:529 , HOH A:1892 , LYS E:214 , VAL E:215 , ASP E:436 , ASN E:450 , HOH E:1050 , HOH E:1151 , HOH E:1326
BINDING SITE FOR RESIDUE GOL E 805
27
EC6
SOFTWARE
HOH A:1571 , HOH A:1688 , HIS E:218 , LYS E:219 , TYR E:448 , HOH F:1037
BINDING SITE FOR RESIDUE GOL E 806
28
FC4
SOFTWARE
TRP A:67 , LYS A:68
BINDING SITE FOR RESIDUE GOL F 807
29
FC5
SOFTWARE
LYS A:561 , ASP A:593 , GOL A:810 , TYR F:160 , LEU F:558 , LYS F:561 , SER F:591 , HOH F:1087 , HOH F:1623
BINDING SITE FOR RESIDUE GOL F 808
30
FC6
SOFTWARE
GLY A:594 , HOH A:952 , ARG F:163 , PHE F:310 , HOH F:934 , HOH F:1190 , HOH F:1204 , HOH F:1313 , HOH F:1857
BINDING SITE FOR RESIDUE GOL F 809
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:394-407,B:394-407)
2: COPPER_AMINE_OXID_2 (A:619-632,B:619-632)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
AMO_PICAN
394-407
2
A:394-407
B:394-407
-
-
-
-
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
AMO_PICAN
619-632
2
A:619-632
B:619-632
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
[
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Asym.Unit (1.5 MB)
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Biol.Unit 1 (530 KB)
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Biol.Unit 3 (524 KB)
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