PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3SX1
Asym. Unit
Info
Asym.Unit (725 KB)
Biol.Unit 1 (481 KB)
Biol.Unit 2 (481 KB)
Biol.Unit 3, α-C (1.4 MB)
Biol.Unit 3 (1.4 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HANSENULA POLYMORPHA COPPER AMINE OXIDASE-1 IN ITS APO FORM
Authors
:
V. J. Klema, B. J. Johnson, C. M. Wilmot
Date
:
14 Jul 11 (Deposition) - 02 May 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: A,B,C (2x)
Keywords
:
Oxidoreductase, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. J. Klema, B. J. Johnson, J. P. Klinman, C. M. Wilmot
The Precursor Form Of Hansenula Polymorpha Copper Amine Oxidase 1 In Complex With Cui And Coii.
Acta Crystallogr. , Sect. F V. 68 501 2012
[
close entry info
]
Hetero Components
(2, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
2a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
14
Ligand/Ion
GLYCEROL
2
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS C:23 , TYR C:64 , LYS C:68 , LYS C:265 , ASP C:280 , HOH C:989 , HOH C:1975 , HOH C:2352
BINDING SITE FOR RESIDUE GOL C 693
02
AC2
SOFTWARE
HIS A:218 , LYS A:219 , TYR A:448 , TYR A:534
BINDING SITE FOR RESIDUE GOL A 693
03
AC3
SOFTWARE
HIS B:23 , TYR B:64 , LYS B:68 , LYS B:265 , ASP B:280 , HOH B:724
BINDING SITE FOR RESIDUE GOL B 693
04
AC4
SOFTWARE
ARG B:163 , PHE B:310 , HOH B:917 , HOH B:1248 , HOH B:2873 , HOH C:765
BINDING SITE FOR RESIDUE GOL B 694
05
AC5
SOFTWARE
PRO A:442 , PRO A:484 , TYR A:485 , HOH A:852 , HOH A:2150 , HOH A:2814
BINDING SITE FOR RESIDUE GOL A 694
06
AC6
SOFTWARE
ARG C:213 , LYS C:214 , VAL C:215 , GLY C:435 , ASP C:436 , ASN C:450 , HOH C:836 , HOH C:1101
BINDING SITE FOR RESIDUE GOL C 694
07
AC7
SOFTWARE
ARG A:211 , LYS A:214 , VAL A:215 , GLY A:435 , ASP A:436
BINDING SITE FOR RESIDUE GOL A 695
08
AC8
SOFTWARE
GLN A:70 , HIS B:218 , LYS B:219 , TYR B:448 , PRO B:449 , HOH B:1040 , TYR C:534
BINDING SITE FOR RESIDUE GOL B 695
09
AC9
SOFTWARE
GLN A:66 , GLN A:70 , GLY A:72 , HOH A:2485 , TYR C:534 , THR C:650 , HOH C:750
BINDING SITE FOR RESIDUE GOL A 696
10
BC1
SOFTWARE
PRO B:484 , TYR B:485 , TYR B:499 , HOH B:1622
BINDING SITE FOR RESIDUE GOL B 696
11
BC2
SOFTWARE
PRO C:484 , TYR C:485
BINDING SITE FOR RESIDUE GOL C 695
12
BC3
SOFTWARE
ARG C:20 , HIS C:218 , LYS C:219
BINDING SITE FOR RESIDUE PO4 C 696
13
BC4
SOFTWARE
PRO B:442 , HOH B:2980 , PRO C:484
BINDING SITE FOR RESIDUE GOL B 697
14
BC5
SOFTWARE
TRP A:67 , LYS A:68 , HOH A:2024
BINDING SITE FOR RESIDUE GOL A 697
15
BC6
SOFTWARE
GLY A:142 , GLU A:147 , TYR A:177 , HOH A:792 , HOH A:908 , HOH B:2841
BINDING SITE FOR RESIDUE GOL A 698
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:394-407,B:394-407,C:394-407)
2: COPPER_AMINE_OXID_2 (A:619-632,B:619-632,C:619-632)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
AMO_PICAN
394-407
3
A:394-407
B:394-407
C:394-407
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
AMO_PICAN
619-632
3
A:619-632
B:619-632
C:619-632
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (725 KB)
Header - Asym.Unit
Biol.Unit 1 (481 KB)
Header - Biol.Unit 1
Biol.Unit 2 (481 KB)
Header - Biol.Unit 2
Biol.Unit 3 (1.4 MB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3SX1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
