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Asym. Unit
Info
Asym.Unit (316 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (81 KB)
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(1)
Title
:
HUMAN CYTOCHROME P450 17A1 IN COMPLEX WITH TOK-001
Authors
:
N. M. Devore, E. E. Scott
Date
:
14 Jul 11 (Deposition) - 25 Jan 12 (Release) - 01 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Cytochrome P450, P450, Cyp17A1, P450C17, P450 17A1, Monooxygenase, 17A-Hydroxylase, 17, 20-Lyase, Heme Protein, Cytochrome P450 Oxidoreductase, Galeterone, Membrane, Tok-001, Vn/124-1, Microsome, Endoplasmic Reticulum, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. M. Devore, E. E. Scott
Structures Of Cytochrome P450 17A1 With Prostate Cancer Drugs Abiraterone And Tok-001.
Nature V. 482 116 2012
[
close entry info
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: (3ALPHA,8ALPHA)-17-(1H-BENZIMIDAZO... (TOKa)
2b: (3ALPHA,8ALPHA)-17-(1H-BENZIMIDAZO... (TOKb)
2c: (3ALPHA,8ALPHA)-17-(1H-BENZIMIDAZO... (TOKc)
2d: (3ALPHA,8ALPHA)-17-(1H-BENZIMIDAZO... (TOKd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
TOK
4
Ligand/Ion
(3ALPHA,8ALPHA)-17-(1H-BENZIMIDAZOL-1-YL)ANDROSTA-5,16-DIEN-3-OL
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:96 , ILE A:112 , ALA A:113 , TRP A:121 , ARG A:125 , PHE A:132 , ALA A:302 , THR A:306 , VAL A:310 , VAL A:366 , LEU A:370 , ILE A:371 , HIS A:373 , PRO A:434 , PHE A:435 , ARG A:440 , SER A:441 , CYS A:442 , ILE A:443 , GLY A:444 , ALA A:448 , TOK A:601
BINDING SITE FOR RESIDUE HEM A 600
2
AC2
SOFTWARE
ALA A:113 , PHE A:114 , ASN A:202 , ILE A:205 , ALA A:302 , THR A:306 , VAL A:366 , ALA A:367 , VAL A:482 , HEM A:600
BINDING SITE FOR RESIDUE TOK A 601
3
AC3
SOFTWARE
ARG B:96 , ILE B:112 , ALA B:113 , TRP B:121 , ARG B:125 , ILE B:299 , GLY B:303 , THR B:306 , VAL B:366 , LEU B:370 , ILE B:371 , HIS B:373 , PRO B:434 , PHE B:435 , ARG B:440 , CYS B:442 , GLY B:444 , ALA B:448 , TOK B:601
BINDING SITE FOR RESIDUE HEM B 600
4
AC4
SOFTWARE
ALA B:113 , PHE B:114 , TYR B:201 , ASN B:202 , ILE B:205 , GLY B:297 , ASP B:298 , ALA B:302 , THR B:306 , VAL B:366 , ALA B:367 , VAL B:482 , HEM B:600
BINDING SITE FOR RESIDUE TOK B 601
5
AC5
SOFTWARE
ARG C:96 , ILE C:112 , ALA C:113 , TRP C:121 , ARG C:125 , PHE C:132 , ALA C:302 , GLY C:303 , THR C:306 , VAL C:366 , LEU C:370 , ILE C:371 , HIS C:373 , PRO C:434 , PHE C:435 , ARG C:440 , SER C:441 , CYS C:442 , ILE C:443 , GLY C:444 , ALA C:448 , TOK C:601
BINDING SITE FOR RESIDUE HEM C 600
6
AC6
SOFTWARE
ALA C:113 , PHE C:114 , TYR C:201 , ASN C:202 , ILE C:205 , GLY C:297 , ASP C:298 , THR C:306 , ALA C:367 , VAL C:482 , VAL C:483 , HEM C:600
BINDING SITE FOR RESIDUE TOK C 601
7
AC7
SOFTWARE
ARG D:96 , ILE D:112 , ALA D:113 , TRP D:121 , ARG D:125 , ALA D:302 , THR D:306 , VAL D:310 , VAL D:366 , LEU D:370 , ILE D:371 , HIS D:373 , PRO D:434 , PHE D:435 , ARG D:440 , CYS D:442 , ILE D:443 , GLY D:444 , ALA D:448 , TOK D:601
BINDING SITE FOR RESIDUE HEM D 600
8
AC8
SOFTWARE
ALA D:113 , PHE D:114 , TYR D:201 , ASN D:202 , ILE D:205 , GLY D:297 , ASP D:298 , ALA D:302 , THR D:306 , VAL D:366 , ALA D:367 , VAL D:482 , HEM D:600
BINDING SITE FOR RESIDUE TOK D 601
[
close Site info
]
SAPs(SNPs)/Variants
(26, 104)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_022745 (P35L, chain A/B/C/D, )
02: VAR_001271 (Y64S, chain A/B/C/D, )
03: VAR_013147 (F93C, chain A/B/C/D, )
04: VAR_073043 (R96Q, chain A/B/C/D, )
05: VAR_022746 (R96W, chain A/B/C/D, )
06: VAR_001272 (S106P, chain A/B/C/D, )
07: VAR_022747 (F114V, chain A/B/C/D, )
08: VAR_022748 (D116V, chain A/B/C/D, )
09: VAR_073044 (W121R, chain A/B/C/D, )
10: VAR_073045 (A174E, chain A/B/C/D, )
11: VAR_022749 (N177D, chain A/B/C/D, )
12: VAR_022750 (Y329D, chain A/B/C/D, )
13: VAR_001274 (P342T, chain A/B/C/D, )
14: VAR_022752 (R347C, chain A/B/C/D, )
15: VAR_001275 (R347H, chain A/B/C/D, )
16: VAR_001276 (R358Q, chain A/B/C/D, )
17: VAR_022753 (R362C, chain A/B/C/D, )
18: VAR_001277 (H373L, chain A/B/C/D, )
19: VAR_073046 (H373N, chain A/B/C/D, )
20: VAR_073047 (W406L, chain A/B/C/D, )
21: VAR_022754 (W406R, chain A/B/C/D, )
22: VAR_022755 (F417C, chain A/B/C/D, )
23: VAR_022756 (P428L, chain A/B/C/D, )
24: VAR_001278 (R440H, chain A/B/C/D, )
25: VAR_001280 (R496C, chain A/B/C/D, )
26: VAR_022757 (R496H, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_022745
P
35
L
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
P
35
L
02
UniProt
VAR_001271
Y
64
S
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
Y
64
S
03
UniProt
VAR_013147
F
93
C
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
F
93
C
04
UniProt
VAR_073043
R
96
Q
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
96
Q
05
UniProt
VAR_022746
R
96
W
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
96
W
06
UniProt
VAR_001272
S
106
P
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
S
106
P
07
UniProt
VAR_022747
F
114
V
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
F
114
V
08
UniProt
VAR_022748
D
116
V
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
D
116
V
09
UniProt
VAR_073044
W
121
R
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
W
121
R
10
UniProt
VAR_073045
A
174
E
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
A
174
E
11
UniProt
VAR_022749
N
177
D
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
N
177
D
12
UniProt
VAR_022750
Y
329
D
CP17A_HUMAN
Disease (AH5)
104894144
A/B/C/D
Y
329
D
13
UniProt
VAR_001274
P
342
T
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
P
342
T
14
UniProt
VAR_022752
R
347
C
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
347
C
15
UniProt
VAR_001275
R
347
H
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
347
H
16
UniProt
VAR_001276
R
358
Q
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
358
Q
17
UniProt
VAR_022753
R
362
C
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
362
C
18
UniProt
VAR_001277
H
373
L
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
H
373
L
19
UniProt
VAR_073046
H
373
N
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
H
373
N
20
UniProt
VAR_073047
W
406
L
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
W
406
L
21
UniProt
VAR_022754
W
406
R
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
W
406
R
22
UniProt
VAR_022755
F
417
C
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
F
417
C
23
UniProt
VAR_022756
P
428
L
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
P
428
L
24
UniProt
VAR_001278
R
440
H
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
440
H
25
UniProt
VAR_001280
R
496
C
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
496
C
26
UniProt
VAR_022757
R
496
H
CP17A_HUMAN
Disease (AH5)
---
A/B/C/D
R
496
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:435-444,B:435-444,C:435-444,D:43...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP17A_HUMAN
435-444
4
A:435-444
B:435-444
C:435-444
D:435-444
[
close PROSITE info
]
Exons
(8, 32)
Info
All Exons
Exon 1.1a (A:30-99 | B:31-99 | C:31-99 | D:30...)
Exon 1.2b (A:100-146 | B:100-146 | C:100-146 ...)
Exon 1.3a (A:146-222 | B:146-222 | C:146-222 ...)
Exon 1.3d (A:223-251 | B:223-251 | C:223-251 ...)
Exon 1.4a (A:252-323 (gaps) | B:252-323 (gaps...)
Exon 1.5 (A:324-380 | B:324-380 | C:324-380 ...)
Exon 1.6b (A:380-415 | B:380-415 | C:380-415 ...)
Exon 1.7c (A:415-504 | B:415-503 | C:415-503 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3a
4: Boundary 1.3a/1.3d
5: Boundary 1.3d/1.4a
6: Boundary 1.4a/1.5
7: Boundary 1.5/1.6b
8: Boundary 1.6b/1.7c
9: Boundary 1.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000369887
1a
ENSE00001451182
chr10:
104597290-104596822
469
CP17A_HUMAN
1-99
99
4
A:30-99
B:31-99
C:31-99
D:30-99
70
69
69
70
1.2b
ENST00000369887
2b
ENSE00000987437
chr10:
104595149-104595011
139
CP17A_HUMAN
100-146
47
4
A:100-146
B:100-146
C:100-146
D:100-146
47
47
47
47
1.3a
ENST00000369887
3a
ENSE00000987438
chr10:
104594771-104594542
230
CP17A_HUMAN
146-222
77
4
A:146-222
B:146-222
C:146-222
D:146-222
77
77
77
77
1.3d
ENST00000369887
3d
ENSE00000987439
chr10:
104593879-104593793
87
CP17A_HUMAN
223-251
29
4
A:223-251
B:223-251
C:223-251
D:223-251
29
29
29
29
1.4a
ENST00000369887
4a
ENSE00000987440
chr10:
104592965-104592750
216
CP17A_HUMAN
252-323
72
4
A:252-323 (gaps)
B:252-323 (gaps)
C:252-323 (gaps)
D:252-323 (gaps)
72
72
72
72
1.5
ENST00000369887
5
ENSE00000987441
chr10:
104592437-104592268
170
CP17A_HUMAN
324-380
57
4
A:324-380
B:324-380
C:324-380
D:324-380
57
57
57
57
1.6b
ENST00000369887
6b
ENSE00000987442
chr10:
104591368-104591265
104
CP17A_HUMAN
380-415
36
4
A:380-415
B:380-415
C:380-415
D:380-415
36
36
36
36
1.7c
ENST00000369887
7c
ENSE00001451179
chr10:
104590742-104590288
455
CP17A_HUMAN
415-508
94
4
A:415-504
B:415-503
C:415-503
D:415-503
90
89
89
89
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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