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3SWS
Asym. Unit
Info
Asym.Unit (597 KB)
Biol.Unit 1 (585 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE QUINONE FORM OF METHYLAMINE DEHYDROGENASE IN COMPLEX WITH THE DIFERRIC FORM OF MAUG
Authors
:
L. M. R. Jensen, C. M. Wilmot
Date
:
14 Jul 11 (Deposition) - 25 Jul 12 (Release) - 25 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Maug, Methylamine Dehydrogenase, Ttq, C-Heme, Oxidoreductase-Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. R. Jensen, C. M. Wilmot
Crystal Structure Of The Quinone Form Of Methylamine Dehydrogenase In Complex With The Diferric Form Of Maug
To Be Published
[
close entry info
]
Hetero Components
(9, 19)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: ACETATE ION (ACTa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
5a: HEME C (HECa)
5b: HEME C (HECb)
5c: HEME C (HECc)
5d: HEME C (HECd)
6a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
7d: SODIUM ION (NAd)
8a: TETRAETHYLENE GLYCOL (PG4a)
9a: 2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1... (TRQa)
9b: 2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1... (TRQb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
ACT
1
Ligand/Ion
ACETATE ION
3
CA
2
Ligand/Ion
CALCIUM ION
4
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
5
HEC
4
Ligand/Ion
HEME C
6
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7
NA
4
Ligand/Ion
SODIUM ION
8
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
9
TRQ
2
Mod. Amino Acid
2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:66 , THR A:275 , PRO A:277 , HOH A:378 , HOH A:380 , HOH A:387 , HOH A:396
BINDING SITE FOR RESIDUE CA A 400
02
AC2
SOFTWARE
ASN A:231 , THR A:233 , HOH A:382 , HOH A:492 , HOH A:854 , HOH A:934
BINDING SITE FOR RESIDUE NA A 401
03
AC3
SOFTWARE
LEU A:250 , ARG A:252 , ILE A:255 , HOH A:777 , HOH A:947 , HOH A:1720
BINDING SITE FOR RESIDUE NA A 402
04
AC4
SOFTWARE
GLN A:29 , SER A:30 , CYS A:31 , CYS A:34 , HIS A:35 , VAL A:55 , ARG A:65 , THR A:67 , PRO A:68 , LEU A:70 , GLN A:91 , PHE A:92 , TRP A:93 , ARG A:96 , LEU A:100 , GLN A:103 , ALA A:104 , PRO A:107 , GLN A:163 , LYS A:265 , HOH A:444 , HOH A:530 , HOH A:1570 , HOH A:2200
BINDING SITE FOR RESIDUE HEC A 500
05
AC5
SOFTWARE
TRP A:93 , ASN A:200 , CYS A:201 , CYS A:204 , HIS A:205 , HIS A:224 , LEU A:228 , PHE A:264 , PRO A:267 , LEU A:269 , TYR A:278 , MET A:279 , HIS A:280 , LEU A:287 , TYR A:294 , HOH A:380 , HOH A:387 , HOH A:426 , HOH A:442 , HOH A:456
BINDING SITE FOR RESIDUE HEC A 600
06
AC6
SOFTWARE
ASN B:66 , THR B:275 , PRO B:277 , HOH B:383 , HOH B:399 , HOH B:417 , HOH B:443
BINDING SITE FOR RESIDUE CA B 400
07
AC7
SOFTWARE
ASN B:231 , THR B:233 , HOH B:411 , HOH B:999 , HOH B:1109 , HOH B:1146
BINDING SITE FOR RESIDUE NA B 401
08
AC8
SOFTWARE
LEU B:250 , ARG B:252 , ILE B:255 , HOH B:517 , HOH B:818 , HOH B:1261
BINDING SITE FOR RESIDUE NA B 402
09
AC9
SOFTWARE
GLN B:29 , SER B:30 , CYS B:31 , CYS B:34 , HIS B:35 , SER B:54 , VAL B:55 , ARG B:65 , THR B:67 , PRO B:68 , LEU B:70 , GLN B:91 , PHE B:92 , TRP B:93 , ARG B:96 , LEU B:100 , GLN B:103 , ALA B:104 , PRO B:107 , GLU B:113 , GLN B:163 , LYS B:265 , HOH B:407 , HOH B:549 , HOH B:605 , HOH B:770 , HOH B:901
BINDING SITE FOR RESIDUE HEC B 500
10
BC1
SOFTWARE
ASN B:200 , CYS B:201 , CYS B:204 , HIS B:205 , HIS B:224 , LEU B:228 , PHE B:264 , PRO B:267 , LEU B:269 , TYR B:278 , MET B:279 , HIS B:280 , LEU B:287 , TYR B:294 , GLU B:327 , HOH B:375 , HOH B:399 , HOH B:417 , HOH B:423 , HOH B:430
BINDING SITE FOR RESIDUE HEC B 600
11
BC2
SOFTWARE
GLU A:137 , ALA A:138 , LEU A:139 , GLY A:141 , ARG D:35 , LEU D:37 , GLU D:38 , HOH D:477
BINDING SITE FOR RESIDUE MES D 387
12
BC3
SOFTWARE
HOH C:457 , GLY D:136 , THR D:137 , TRP D:282 , GLN D:378 , HOH D:695 , HOH D:1241
BINDING SITE FOR RESIDUE EDO D 388
13
BC4
SOFTWARE
GLU B:347 , LEU B:358 , HOH B:489
BINDING SITE FOR RESIDUE EDO B 374
14
BC5
SOFTWARE
ALA A:164 , ARG A:215
BINDING SITE FOR RESIDUE EDO A 374
15
BC6
SOFTWARE
ARG D:174 , LEU D:176 , ASP D:177 , THR D:211 , PRO D:212
BINDING SITE FOR RESIDUE ACT D 389
16
BC7
SOFTWARE
THR D:187 , LYS D:236 , ALA D:237 , GLY D:238 , LEU D:254 , SER D:255 , HOH D:1365
BINDING SITE FOR RESIDUE 1PE D 390
17
BC8
SOFTWARE
THR F:187 , LYS F:236 , SER F:255 , GLY F:257 , HOH F:851
BINDING SITE FOR RESIDUE PG4 F 387
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:9-130,B:9-130|A:176-350,B:176-35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
MAUG_PARDP
29-150
196-370
4
A:9-130
B:9-130
A:176-350
B:176-350
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3swsd_ (D:)
1b: SCOP_d3swsf_ (F:)
2a: SCOP_d3swsc_ (C:)
2b: SCOP_d3swse_ (E:)
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(
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(31)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Paracoccus denitrificans [TaxId: 318586]
(18)
1a
d3swsd_
D:
1b
d3swsf_
F:
Class
:
Small proteins
(3458)
Fold
:
Methylamine dehydrogenase, L chain
(68)
Superfamily
:
Methylamine dehydrogenase, L chain
(68)
Family
:
Methylamine dehydrogenase, L chain
(41)
Protein domain
:
automated matches
(32)
Paracoccus denitrificans [TaxId: 318586]
(19)
2a
d3swsc_
C:
2b
d3swse_
E:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain C
Chain D
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Chain F
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