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3SWB
Asym. Unit
Info
Asym.Unit (39 KB)
Biol.Unit 1 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF HUMAN CARDIAC TROPONIN C IN COMPLEX WITH CADMIUM AT 1.7 A RESOLUTION
Authors
:
X. L. Zhang, M. Paetzel
Date
:
13 Jul 11 (Deposition) - 18 Jul 12 (Release) - 15 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Helix-Loop-Helix Ef-Hand Motif, Contractile Protein, Calcium Sensor, Cadmium Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. L. Zhang, G. F. Tibbits, M. Paetzel
The Structure Of Cardiac Troponin C Regulatory Domain With Bound Cd(2+) Reveals A Closed Conformation And Unique Ion Coordination.
Acta Crystallogr. , Sect. D V. 69 722 2013
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: CADMIUM ION (CDa)
3b: CADMIUM ION (CDb)
3c: CADMIUM ION (CDc)
3d: CADMIUM ION (CDd)
3e: CADMIUM ION (CDe)
3f: CADMIUM ION (CDf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
3
Ligand/Ion
CALCIUM ION
3
CD
6
Ligand/Ion
CADMIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:27 , GLU A:40 , GLU A:63 , HOH A:119 , HOH A:122
BINDING SITE FOR RESIDUE CD A 101
02
AC2
SOFTWARE
GLU A:56 , CYS A:84 , ASP A:87 , SER A:89 , CD A:103
BINDING SITE FOR RESIDUE CD A 102
03
AC3
SOFTWARE
GLN A:50 , CYS A:84 , ASP A:87 , ASP A:88 , SER A:89 , CD A:102
BINDING SITE FOR RESIDUE CD A 103
04
AC4
SOFTWARE
ASP A:33 , CYS A:35 , ACT A:93 , HOH A:95
BINDING SITE FOR RESIDUE CD A 104
05
AC5
SOFTWARE
CYS A:35 , GLU A:66 , ASP A:73 , ASP A:75
BINDING SITE FOR RESIDUE CD A 105
06
AC6
SOFTWARE
MET A:1 , GLU A:59 , HOH A:129 , HOH A:143 , HOH A:144
BINDING SITE FOR RESIDUE CD A 106
07
AC7
SOFTWARE
GLU A:10 , GLU A:19 , HOH A:124
BINDING SITE FOR RESIDUE CA A 90
08
AC8
SOFTWARE
ASP A:65 , THR A:71 , GLU A:76 , HOH A:139 , HOH A:140 , HOH A:141
BINDING SITE FOR RESIDUE CA A 91
09
AC9
SOFTWARE
GLU A:15 , GLU A:19
BINDING SITE FOR RESIDUE CA A 92
10
BC1
SOFTWARE
MET A:1 , ASP A:33 , CYS A:35 , GLU A:59 , CD A:104 , HOH A:119 , HOH A:122
BINDING SITE FOR RESIDUE ACT A 93
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063070 (A8V, chain A, )
2: VAR_019776 (L29Q, chain A, )
3: VAR_063071 (C84Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063070
A
8
V
TNNC1_HUMAN
Disease (CMH13)
---
A
A
8
V
2
UniProt
VAR_019776
L
29
Q
TNNC1_HUMAN
Disease (CMH13)
---
A
L
29
Q
3
UniProt
VAR_063071
C
84
Y
TNNC1_HUMAN
Disease (CMH13)
---
A
C
84
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:33-51|A:52-87|-|-)
2: EF_HAND_1 (A:65-77|-|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC1_HUMAN
33-51
52-87
92-127
128-161
2
A:33-51
A:52-87
-
-
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC1_HUMAN
65-77
105-117
141-153
1
A:65-77
-
-
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:1-8)
Exon 1.2b (A:9-19)
Exon 1.3 (A:19-66)
Exon 1.4b (A:70-89)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2b
3: Boundary 1.2b/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5c
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000232975
1
ENSE00001063786
chr3:
52488086-52488008
79
TNNC1_HUMAN
1-8
8
1
A:1-8
8
1.2b
ENST00000232975
2b
ENSE00000770833
chr3:
52486529-52486499
31
TNNC1_HUMAN
9-19
11
1
A:9-19
11
1.3
ENST00000232975
3
ENSE00000770832
chr3:
52486268-52486122
147
TNNC1_HUMAN
19-68
50
1
A:19-66
48
1.4b
ENST00000232975
4b
ENSE00000770831
chr3:
52485874-52485760
115
TNNC1_HUMAN
68-106
39
1
A:70-89
20
1.5c
ENST00000232975
5c
ENSE00000770830
chr3:
52485543-52485407
137
TNNC1_HUMAN
106-152
47
0
-
-
1.6
ENST00000232975
6
ENSE00001063787
chr3:
52485322-52485118
205
TNNC1_HUMAN
152-161
10
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3swba_ (A:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Troponin C
(53)
Human (Homo sapiens), cardiac isoform [TaxId: 9606]
(16)
1a
d3swba_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (39 KB)
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