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Asym. Unit
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Asym.Unit (598 KB)
Biol.Unit 1 (586 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE P107V-MAUG/PRE-METHYLAMINE DEHYDROGENASE COMPLEX
Authors
:
L. M. R. Jensen, C. M. Wilmot
Date
:
12 Jul 11 (Deposition) - 02 May 12 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Maug, Methylamine Dehydrogenase, C-Heme, Quinone Cofactor, Oxidoreductase-Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Feng, L. M. Jensen, E. T. Yukl, X. Wei, A. Liu, C. M. Wilmot, V. L. Davidson
Proline 107 Is A Major Determinant In Maintaining The Structure Of The Distal Pocket And Reactivity Of The High-Spin Heme Of Maug.
Biochemistry V. 51 1598 2012
[
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Hetero Components
(9, 21)
Info
All Hetero Components
1a: 7-HYDROXY-L-TRYPTOPHAN (0AFa)
1b: 7-HYDROXY-L-TRYPTOPHAN (0AFb)
2a: ACETATE ION (ACTa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
5a: HEME C (HECa)
5b: HEME C (HECb)
5c: HEME C (HECc)
5d: HEME C (HECd)
6a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
7d: SODIUM ION (NAd)
8a: DI(HYDROXYETHYL)ETHER (PEGa)
8b: DI(HYDROXYETHYL)ETHER (PEGb)
8c: DI(HYDROXYETHYL)ETHER (PEGc)
9a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0AF
2
Mod. Amino Acid
7-HYDROXY-L-TRYPTOPHAN
2
ACT
1
Ligand/Ion
ACETATE ION
3
CA
2
Ligand/Ion
CALCIUM ION
4
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
5
HEC
4
Ligand/Ion
HEME C
6
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7
NA
4
Ligand/Ion
SODIUM ION
8
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
9
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:66 , THR A:275 , PRO A:277 , HOH A:378 , HOH A:379 , HOH A:386 , HOH A:394
BINDING SITE FOR RESIDUE CA A 400
02
AC2
SOFTWARE
ASN A:231 , THR A:233 , HOH A:381 , HOH A:492 , HOH A:854 , HOH A:934
BINDING SITE FOR RESIDUE NA A 401
03
AC3
SOFTWARE
LEU A:250 , ARG A:252 , ILE A:255 , HOH A:777 , HOH A:947 , HOH A:2476
BINDING SITE FOR RESIDUE NA A 402
04
AC4
SOFTWARE
GLN A:29 , SER A:30 , CYS A:31 , CYS A:34 , HIS A:35 , ARG A:65 , THR A:67 , PRO A:68 , LEU A:70 , GLN A:91 , PHE A:92 , TRP A:93 , ARG A:96 , LEU A:100 , GLN A:103 , VAL A:107 , GLU A:113 , MET A:114 , GLN A:163 , LYS A:265 , HOH A:432 , HOH A:530 , HOH A:1195 , HOH A:1330
BINDING SITE FOR RESIDUE HEC A 500
05
AC5
SOFTWARE
TRP A:93 , ASN A:200 , CYS A:201 , CYS A:204 , HIS A:205 , HIS A:224 , LEU A:228 , PHE A:264 , PRO A:267 , TYR A:278 , MET A:279 , HIS A:280 , LEU A:287 , TYR A:294 , SER A:324 , GLU A:327 , HOH A:379 , HOH A:386 , HOH A:421 , HOH A:431 , HOH A:456
BINDING SITE FOR RESIDUE HEC A 600
06
AC6
SOFTWARE
ASN B:66 , THR B:275 , PRO B:277 , HOH B:385 , HOH B:403 , HOH B:414 , HOH B:443
BINDING SITE FOR RESIDUE CA B 400
07
AC7
SOFTWARE
ASN B:231 , THR B:233 , HOH B:409 , HOH B:999 , HOH B:1109 , HOH B:1146
BINDING SITE FOR RESIDUE NA B 401
08
AC8
SOFTWARE
LEU B:250 , ARG B:252 , ILE B:255 , HOH B:517 , HOH B:1261 , HOH B:2475
BINDING SITE FOR RESIDUE NA B 402
09
AC9
SOFTWARE
GLN B:29 , SER B:30 , CYS B:31 , CYS B:34 , HIS B:35 , VAL B:55 , ARG B:65 , THR B:67 , PRO B:68 , LEU B:70 , GLN B:91 , PHE B:92 , TRP B:93 , ARG B:96 , LEU B:100 , GLN B:103 , VAL B:107 , MET B:114 , GLN B:163 , LYS B:265 , HOH B:549 , HOH B:605 , HOH B:901 , HOH B:2293
BINDING SITE FOR RESIDUE HEC B 500
10
BC1
SOFTWARE
TRP B:93 , ASN B:200 , CYS B:201 , CYS B:204 , HIS B:205 , HIS B:224 , LEU B:228 , PHE B:264 , PRO B:267 , TYR B:278 , MET B:279 , HIS B:280 , LEU B:287 , TYR B:294 , SER B:324 , GLU B:327 , HOH B:377 , HOH B:403 , HOH B:414 , HOH B:419 , HOH B:424
BINDING SITE FOR RESIDUE HEC B 600
11
BC2
SOFTWARE
ALA B:138 , LEU B:139 , PHE B:140 , GLY B:141 , ARG F:35 , LEU F:37 , GLU F:38 , HOH F:502 , HOH F:1434
BINDING SITE FOR RESIDUE MES F 387
12
BC3
SOFTWARE
GLU B:347 , LEU B:358 , GLU B:359 , GLU B:360 , HOH B:844
BINDING SITE FOR RESIDUE PEG B 374
13
BC4
SOFTWARE
ALA B:74 , ALA B:164 , ARG B:215
BINDING SITE FOR RESIDUE EDO B 375
14
BC5
SOFTWARE
GLY D:136 , THR D:137 , TRP D:282 , GLN D:378 , HOH D:457 , HOH D:695 , HOH D:1241
BINDING SITE FOR RESIDUE EDO D 387
15
BC6
SOFTWARE
ARG D:35 , LEU D:37 , GLU D:38 , HOH D:1753 , HOH D:2149
BINDING SITE FOR RESIDUE ACT D 388
16
BC7
SOFTWARE
LYS A:101 , GLN A:102 , GLY A:105 , GLN A:106 , ARG A:119 , PHE A:152 , ASP A:153 , ALA A:156 , HOH A:441 , HOH A:1783
BINDING SITE FOR RESIDUE PGE A 374
17
BC8
SOFTWARE
TRP F:140 , TYR F:233 , THR F:381 , HOH F:438 , HOH F:457 , HOH F:459 , HOH F:475 , HOH F:479 , HOH F:606 , HOH F:1010 , HOH F:1253
BINDING SITE FOR RESIDUE PEG F 388
18
BC9
SOFTWARE
HIS D:375 , HOH D:1668 , ALA F:53 , ALA F:56 , HIS F:375 , HOH F:578 , HOH F:617 , HOH F:1692
BINDING SITE FOR RESIDUE EDO F 389
19
CC1
SOFTWARE
LEU B:325 , ALA B:326 , GLN B:329 , HOH B:611 , HOH B:776 , HOH B:1767 , THR E:54 , GLY E:111 , HOH E:884
BINDING SITE FOR RESIDUE PEG B 376
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:9-130,B:9-130|A:176-350,B:176-35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
MAUG_PARDP
29-150
196-370
4
A:9-130
B:9-130
A:176-350
B:176-350
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3svwd_ (D:)
1b: SCOP_d3svwf_ (F:)
2a: SCOP_d3svwc_ (C:)
2b: SCOP_d3svwe_ (E:)
View:
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(31)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Paracoccus denitrificans [TaxId: 318586]
(18)
1a
d3svwd_
D:
1b
d3svwf_
F:
Class
:
Small proteins
(3458)
Fold
:
Methylamine dehydrogenase, L chain
(68)
Superfamily
:
Methylamine dehydrogenase, L chain
(68)
Family
:
Methylamine dehydrogenase, L chain
(41)
Protein domain
:
automated matches
(32)
Paracoccus denitrificans [TaxId: 318586]
(19)
2a
d3svwc_
C:
2b
d3svwe_
E:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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]
Atom Selection
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)
Protein
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Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
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