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3SUI
Asym. Unit
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Asym.Unit (66 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CA2+-CALMODULIN IN COMPLEX WITH A TRPV1 C-TERMINAL PEPTIDE
Authors
:
S. -Y. Lau, R. Gaudet
Date
:
11 Jul 11 (Deposition) - 12 Sep 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Calmodulin, Calcium-Calmodulin, Trpv1, Trpv1 C-Terminus, Calmodulin Complex, Thermosensor, Trp Channel, Ef Hands, 1-10 Motif, Calcium Channel, Calmodulin-Binding, Ion Channel, Calcium Binding Protein, Calcium-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Y. Lau, E. Procko, R. Gaudet
Distinct Properties Of Ca2+-Calmodulin Binding To N- And C-Terminal Regulatory Regions Of The Trpv1 Channel.
J. Gen. Physiol. V. 140 541 2012
[
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , GLU A:31 , HOH A:195
BINDING SITE FOR RESIDUE CA A 501
2
AC2
SOFTWARE
ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , GLU A:67 , HOH A:175
BINDING SITE FOR RESIDUE CA A 502
3
AC3
SOFTWARE
ASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104 , HOH A:166
BINDING SITE FOR RESIDUE CA A 503
4
AC4
SOFTWARE
ASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , GLU A:140 , HOH A:159
BINDING SITE FOR RESIDUE CA A 504
5
AC5
SOFTWARE
GLN A:41 , ASN A:42 , ARG B:797
BINDING SITE FOR RESIDUE SO4 A 149
[
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SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_069222 (N53I, chain A, )
02: VAR_048585 (M72T, chain A, )
03: VAR_073275 (F89L, chain A, )
04: VAR_073276 (D95V, chain A, )
05: VAR_073277 (N97I, chain A, )
06: VAR_069223 (N97S, chain A, )
07: VAR_073278 (D129G, chain A, )
08: VAR_073279 (D131E, chain A, )
09: VAR_073280 (D133H, chain A, )
10: VAR_073281 (Q135P, chain A, )
11: VAR_073282 (F141L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
A
N
53
I
02
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
A
M
72
T
03
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
A
F
89
L
04
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
A
D
95
V
05
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
A
N
97
I
06
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
A
N
97
S
07
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
A
D
129
G
08
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
A
D
131
E
09
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
A
D
133
H
10
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
A
Q
135
P
11
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
A
F
141
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:7-42|A:43-78|A:80-115|A:116-148,...)
2: EF_HAND_1 (A:20-32|A:56-68|A:93-105|A:129-141...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-148
CALM2_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-148
CALM3_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-148
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
CALM2_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
CALM3_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:129-141
[
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]
Exons
(1, 1)
Info
All Exons
Exon 1.16 (B:784-798)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000026493
1
ENSRNOE00000189884
chr10:
60109656-60109702
47
TRPV1_RAT
-
0
0
-
-
1.2
ENSRNOT00000026493
2
ENSRNOE00000189906
chr10:
60113571-60113887
317
TRPV1_RAT
1-95
95
0
-
-
1.3
ENSRNOT00000026493
3
ENSRNOE00000189206
chr10:
60114528-60114691
164
TRPV1_RAT
95-150
56
0
-
-
1.4
ENSRNOT00000026493
4
ENSRNOE00000189276
chr10:
60114768-60114920
153
TRPV1_RAT
150-201
52
0
-
-
1.5
ENSRNOT00000026493
5
ENSRNOE00000189333
chr10:
60115485-60115625
141
TRPV1_RAT
201-248
48
0
-
-
1.6
ENSRNOT00000026493
6
ENSRNOE00000189392
chr10:
60115727-60116025
299
TRPV1_RAT
248-347
100
0
-
-
1.7
ENSRNOT00000026493
7
ENSRNOE00000189985
chr10:
60116724-60116903
180
TRPV1_RAT
348-407
60
0
-
-
1.8
ENSRNOT00000026493
8
ENSRNOE00000189447
chr10:
60119344-60119502
159
TRPV1_RAT
408-460
53
0
-
-
1.9
ENSRNOT00000026493
9
ENSRNOE00000189477
chr10:
60121031-60121126
96
TRPV1_RAT
461-492
32
0
-
-
1.10
ENSRNOT00000026493
10
ENSRNOE00000268470
chr10:
60123512-60123582
71
TRPV1_RAT
493-516
24
0
-
-
1.11
ENSRNOT00000026493
11
ENSRNOE00000268462
chr10:
60125844-60126009
166
TRPV1_RAT
516-571
56
0
-
-
1.12
ENSRNOT00000026493
12
ENSRNOE00000268452
chr10:
60126415-60126481
67
TRPV1_RAT
572-594
23
0
-
-
1.13
ENSRNOT00000026493
13
ENSRNOE00000268443
chr10:
60127940-60128259
320
TRPV1_RAT
594-700
107
0
-
-
1.14
ENSRNOT00000026493
14
ENSRNOE00000268434
chr10:
60129169-60129296
128
TRPV1_RAT
701-743
43
0
-
-
1.15
ENSRNOT00000026493
15
ENSRNOE00000268427
chr10:
60129747-60129862
116
TRPV1_RAT
743-782
40
0
-
-
1.16
ENSRNOT00000026493
16
ENSRNOE00000190023
chr10:
60134517-60134939
423
TRPV1_RAT
782-838
57
1
B:784-798
15
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3suia_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d3suia_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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