PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3STM
Asym. Unit
Info
Asym.Unit (26 KB)
Biol.Unit 1 (22 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HUMAN LFABP IN COMPLEX WITH ONE MOLECULE OF PALMITIC ACID
Authors
:
A. Sharma, A. Sharma
Date
:
11 Jul 11 (Deposition) - 10 Aug 11 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Lfabp, Palmitic Acid, Fatty Acid Binding, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Sharma, A. Sharma
Fatty Acid Induced Remodeling Within The Human Liver Fatty Acid Binding Protein
J. Biol. Chem. 2011
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: PALMITIC ACID (PLMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PLM
1
Ligand/Ion
PALMITIC ACID
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER X:39 , PHE X:50 , GLU X:72 , THR X:102 , ASN X:111 , ARG X:122 , HOH X:132
BINDING SITE FOR RESIDUE PLM X 130
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014662 (A54T, chain X, )
2: VAR_022093 (T94A, chain X, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014662
A
54
T
FABPL_HUMAN
Polymorphism
1801273
X
A
54
T
2
UniProt
VAR_022093
T
94
A
FABPL_HUMAN
Polymorphism
2241883
X
T
94
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FABP (X:5-22)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FABP
PS00214
Cytosolic fatty-acid binding proteins signature.
FABPL_HUMAN
5-22
1
X:5-22
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.1a (X:2-23)
Exon 1.3a (X:23-80)
Exon 1.4a (X:81-111)
Exon 1.4d (X:112-127)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3a
3: Boundary 1.3a/1.4a
4: Boundary 1.4a/1.4d
5: Boundary 1.4d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000295834
1a
ENSE00001876850
chr2:
88427635-88427470
166
FABPL_HUMAN
1-23
23
1
X:2-23
22
1.3a
ENST00000295834
3a
ENSE00001076276
chr2:
88425867-88425695
173
FABPL_HUMAN
23-80
58
1
X:23-80
58
1.4a
ENST00000295834
4a
ENSE00001076280
chr2:
88424105-88424013
93
FABPL_HUMAN
81-111
31
1
X:81-111
31
1.4d
ENST00000295834
4d
ENSE00001076278
chr2:
88422623-88422510
114
FABPL_HUMAN
112-127
16
1
X:112-127
16
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3stmx_ (X:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
Liver fatty acid binding protein
(26)
Human (Homo sapiens) [TaxId: 9606]
(19)
1a
d3stmx_
X:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain X
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (26 KB)
Header - Asym.Unit
Biol.Unit 1 (22 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3STM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
