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3SSK
Asym. Unit
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Asym.Unit (126 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
ENGINEERED HIGH-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: BROMIDE COMPLEX
Authors
:
W. Wang, J. S. Grimley, L. S. Beese, H. W. Hellinga
Date
:
08 Jul 11 (Deposition) - 11 Jul 12 (Release) - 11 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.36
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Barrel, Luminescent Protein, Yellow Fluorescent Protein, Imaging Reagent, Halide Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Wang, J. S. Grimley, G. J. Augustine, L. S. Beese, H. W. Hellinga
Determination Of Engineered Chloride-Binding Site Structure In Fluorescent Proteins Reveals Principles Of Halide Recognition
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
2a: {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROX... (CR2a)
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No.
Name
Count
Type
Full Name
1
BR
3
Ligand/Ion
BROMIDE ION
2
CR2
1
Mod. Amino Acid
{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:69 , ARG A:96 , VAL A:163 , ALA A:183 , ASN A:185
BINDING SITE FOR RESIDUE BR A 260
2
AC2
SOFTWARE
TRP A:57 , HOH A:289 , HOH A:348 , HOH A:426
BINDING SITE FOR RESIDUE BR A 261
3
AC3
SOFTWARE
ASN A:144 , ALA A:206 , LEU A:207 , HOH A:374
BINDING SITE FOR RESIDUE BR A 262
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GFP_AEQVI_001 (F100Y, chain A, )
2: VAR_GFP_AEQVI_002 (T108S, chain A, )
3: VAR_GFP_AEQVI_003 (L141M, chain A, )
4: VAR_GFP_AEQVI_004 (V219I, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
A
F
100
Y
2
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
A
T
108
S
3
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
A
L
141
M
4
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
A
V
219
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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SCOP Domains
(1, 1)
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1a: SCOP_d3sska_ (A:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
Green fluorescent protein, GFP
(161)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(158)
1a
d3sska_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (126 KB)
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