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3SR2
Asym. Unit
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Asym.Unit (202 KB)
Biol.Unit 1 (196 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (63 KB)
Biol.Unit 4 (42 KB)
Biol.Unit 5 (63 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN XLF-XRCC4 COMPLEX
Authors
:
M. Hammel, S. Classen, J. A. Tainer
Date
:
06 Jul 11 (Deposition) - 20 Jul 11 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.97
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: G,H (1x)
Keywords
:
Xrcc4, Xlf, Nhej, Dna Repair, Dna, Dna Ligases, Dna-Binding Proteins, Dimerization, Humans, Protein Structure, Quaternary, Complex, Non- Homologous End Joining (Nhej), Dna Ligase Iv, Ku, Xlf-Xrcc4, Protein Dna-Interaction, Dna Binding Protein-Protein Binding Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hammel, M. Rey, Y. Yu, R. S. Mani, S. Classen, M. Liu, M. E. Pique, S. Fang, B. L. Mahaney, M. Weinfeld, D. C. Schriemer, S. P. Lees-Miller J. A. Tainer
Xrcc4 Protein Interactions With Xrcc4-Like Factor (Xlf) Create An Extended Grooved Scaffold For Dna Ligation And Double Strand Break Repair.
J. Biol. Chem. V. 286 32638 2011
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(6, 24)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022310 (S12C, chain A/B/E/F, )
2: VAR_038790 (A14T, chain C/D/G/H, )
3: VAR_022311 (A56T, chain A/B/E/F, )
4: VAR_025704 (R57G, chain C/D/G/H, )
5: VAR_025705 (C123R, chain C/D/G/H, )
6: VAR_022312 (I134T, chain A/B/E/F, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022310
S
12
C
XRCC4_HUMAN
Polymorphism
28383138
A/B/E/F
S
12
C
2
UniProt
VAR_038790
A
14
T
NHEJ1_HUMAN
Polymorphism
34689457
C/D/G/H
A
14
T
3
UniProt
VAR_022311
A
56
T
XRCC4_HUMAN
Polymorphism
28383151
A/B/E/F
A
56
T
4
UniProt
VAR_025704
R
57
G
NHEJ1_HUMAN
Disease (NHEJ1-SCID)
---
C/D/G/H
R
57
G
5
UniProt
VAR_025705
C
123
R
NHEJ1_HUMAN
Disease (NHEJ1-SCID)
---
C/D/G/H
C
123
R
6
UniProt
VAR_022312
I
134
T
XRCC4_HUMAN
Polymorphism
28360135
A/B/E/F
I
134
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(8, 32)
Info
All Exons
Exon 1.2b (A:1-47 | B:1-47 | E:1-47 | F:1-47)
Exon 1.3a (A:47-105 | B:47-105 | E:47-105 | F...)
Exon 1.4 (A:106-139 | B:106-140 | E:106-140 ...)
Exon 2.4b (C:1-59 | D:1-59 | G:1-59 | H:1-59)
Exon 2.5a (C:60-130 (gaps) | D:60-130 (gaps) ...)
Exon 2.6 (C:131-177 | D:131-177 | G:131-177 ...)
Exon 2.7b (C:177-196 | D:177-196 | G:177-196 ...)
Exon 2.11b (C:197-224 | D:197-224 | G:197-224 ...)
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All Exon Boundaries
01: Boundary 1.1b/1.2b
02: Boundary 1.2b/1.3a
03: Boundary 1.3a/1.4
04: Boundary 1.4/1.5
05: Boundary 2.1b/2.4b
06: Boundary 2.4b/2.5a
07: Boundary 2.5a/2.6
08: Boundary 2.6/2.7b
09: Boundary 2.7b/2.11b
10: Boundary 2.11b/2.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000338635
1b
ENSE00001556292
chr5:
82373346-82373434
89
XRCC4_HUMAN
-
0
0
-
-
1.2b
ENST00000338635
2b
ENSE00002174590
chr5:
82400729-82400877
149
XRCC4_HUMAN
1-47
47
4
A:1-47
B:1-47
E:1-47
F:1-47
47
47
47
47
1.3a
ENST00000338635
3a
ENSE00000971597
chr5:
82406847-82407022
176
XRCC4_HUMAN
47-105
59
4
A:47-105
B:47-105
E:47-105
F:47-105
59
59
59
59
1.4
ENST00000338635
4
ENSE00001005114
chr5:
82491589-82491755
167
XRCC4_HUMAN
106-161
56
4
A:106-139
B:106-140
E:106-140
F:106-140
34
35
35
35
1.5
ENST00000338635
5
ENSE00001005109
chr5:
82499371-82499526
156
XRCC4_HUMAN
161-213
53
0
-
-
1.6
ENST00000338635
6
ENSE00001005110
chr5:
82500634-82500740
107
XRCC4_HUMAN
213-249
37
0
-
-
1.7a
ENST00000338635
7a
ENSE00001005113
chr5:
82554349-82554496
148
XRCC4_HUMAN
249-298
50
0
-
-
1.8a
ENST00000338635
8a
ENSE00001932573
chr5:
82648944-82649530
587
XRCC4_HUMAN
298-336
39
0
-
-
2.1b
ENST00000356853
1b
ENSE00001869065
chr2:
220025575-220025442
134
NHEJ1_HUMAN
-
0
0
-
-
2.4b
ENST00000356853
4b
ENSE00002167216
chr2:
220023084-220022908
177
NHEJ1_HUMAN
1-59
59
4
C:1-59
D:1-59
G:1-59
H:1-59
59
59
59
59
2.5a
ENST00000356853
5a
ENSE00001708572
chr2:
220022406-220022194
213
NHEJ1_HUMAN
60-130
71
4
C:60-130 (gaps)
D:60-130 (gaps)
G:60-130 (gaps)
H:60-130 (gaps)
71
71
71
71
2.6
ENST00000356853
6
ENSE00001664826
chr2:
220012517-220012379
139
NHEJ1_HUMAN
131-177
47
4
C:131-177
D:131-177
G:131-177
H:131-177
47
47
47
47
2.7b
ENST00000356853
7b
ENSE00001631569
chr2:
220011460-220011402
59
NHEJ1_HUMAN
177-196
20
4
C:177-196
D:177-196
G:177-196
H:177-196
20
20
20
20
2.11b
ENST00000356853
11b
ENSE00001776599
chr2:
219942928-219942811
118
NHEJ1_HUMAN
197-236
40
4
C:197-224
D:197-224
G:197-224
H:197-224
28
28
28
28
2.12
ENST00000356853
12
ENSE00001706214
chr2:
219942086-219941968
119
NHEJ1_HUMAN
236-275
40
0
-
-
2.13f
ENST00000356853
13f
ENSE00001781266
chr2:
219941177-219940043
1135
NHEJ1_HUMAN
276-299
24
0
-
-
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