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Asym. Unit
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Asym.Unit (579 KB)
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Biol.Unit 6 (148 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE YEAST TYROSYL-DNA PHOSPHODIESTERASE H182A MUTANT
Authors
:
S. Gajewski, S. W. White
Date
:
04 Jul 11 (Deposition) - 28 Dec 11 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C (1x)
Keywords
:
Phosphodiesterase, Dna Binding, Nuclear, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Gajewski, E. Q. Comeaux, N. Jafari, N. Bharatham, D. Bashford, S. W. White, R. C. Van Waardenburg
Analysis Of The Active-Site Mechanism Of Tyrosyl-Dna Phosphodiesterase I: A Member Of The Phospholipase D Superfamily.
J. Mol. Biol. V. 415 741 2012
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Hetero Components
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Exons
(1, 4)
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Exon 1.1 (A:79-540 (gaps) | B:79-539 (gaps) ...)
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1: Boundary -/1.1
2: Boundary 1.1/-
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ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YBR223C
1
YBR223C.1
II:670292-668658
1635
TYDP1_YEAST
1-544
544
4
A:79-540 (gaps)
B:79-539 (gaps)
C:79-538 (gaps)
D:79-540 (gaps)
462
461
460
462
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SCOP Domains
(1, 8)
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1a: SCOP_d3sq3a1 (A:79-293)
1b: SCOP_d3sq3a2 (A:294-540)
1c: SCOP_d3sq3b1 (B:79-293)
1d: SCOP_d3sq3b2 (B:294-539)
1e: SCOP_d3sq3c1 (C:79-293)
1f: SCOP_d3sq3c2 (C:294-538)
1g: SCOP_d3sq3d1 (D:79-293)
1h: SCOP_d3sq3d2 (D:294-540)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Phospholipase D/nuclease
(33)
Superfamily
:
Phospholipase D/nuclease
(33)
Family
:
Tyrosyl-DNA phosphodiesterase TDP1
(17)
Protein domain
:
automated matches
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(4)
1a
d3sq3a1
A:79-293
1b
d3sq3a2
A:294-540
1c
d3sq3b1
B:79-293
1d
d3sq3b2
B:294-539
1e
d3sq3c1
C:79-293
1f
d3sq3c2
C:294-538
1g
d3sq3d1
D:79-293
1h
d3sq3d2
D:294-540
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Asym.Unit (579 KB)
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