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3SP7
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BCL-XL BOUND TO BM903
Authors
:
J. L. Meagher, J. A. Stuckey
Date
:
01 Jul 11 (Deposition) - 04 Jul 12 (Release) - 04 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bcl-2-Like Protein, Apoptosis Regulator-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhou, J. Chen, J. L. Meagher, A. Aguilar, L. Bai, L. Liu, C. Y. Yang, C. Xin, J. A. Stuckey, S. Wang
Structure-Based Design Of A New Class Of Potent Bcl-2/Bcl-X Inhibitors
To Be Published
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 5-(4-CHLOROPHENYL)-4-{3-[4-(4-{[(4... (03Ba)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
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No.
Name
Count
Type
Full Name
1
03B
1
Ligand/Ion
5-(4-CHLOROPHENYL)-4-{3-[4-(4-{[(4-{[(2R)-4-(DIMETHYLAMINO)-1-(PHENYLSULFANYL)BUTAN-2-YL]AMINO}-3-NITROPHENYL)SULFONYL]AMINO}PHENYL)PIPERAZIN-1-YL]PHENYL}-1,2-DIMETHYL-1H-PYRROLE-3-CARBOXYLIC ACID
2
ACT
3
Ligand/Ion
ACETATE ION
3
ZN
4
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:0 , GLN A:19 , LYS A:20 , HOH A:32 , HOH A:36 , HOH A:42 , GLU A:96 , PHE A:97 , ARG A:100 , TYR A:101 , ALA A:104 , PHE A:105 , GLU A:129 , LEU A:130 , ARG A:132 , ASN A:136 , TRP A:137 , GLY A:138 , ARG A:139 , VAL A:141 , ALA A:142 , PHE A:146 , ALA A:149 , PHE A:191 , TYR A:195 , ASN A:198 , ALA A:199 , HOH A:246 , HOH A:250 , HOH A:333
BINDING SITE FOR RESIDUE 03B A 210
2
AC2
SOFTWARE
GLU A:7 , ASP A:11 , HOH A:243 , HOH A:317
BINDING SITE FOR RESIDUE ZN A 211
3
AC3
SOFTWARE
LYS A:20 , GLU A:98 , GLU A:129 , HOH A:285 , HOH A:287 , ACT A:501
BINDING SITE FOR RESIDUE ZN A 212
4
AC4
SOFTWARE
GLU A:124 , HIS A:177 , GLU A:193 , ACT A:503
BINDING SITE FOR RESIDUE ZN A 213
5
AC5
SOFTWARE
GLU A:184
BINDING SITE FOR RESIDUE ZN A 214
6
AC6
SOFTWARE
GLU A:98 , GLU A:129 , ALA A:149 , ZN A:212 , HOH A:285 , HOH A:301 , HOH A:329
BINDING SITE FOR RESIDUE ACT A 501
7
AC7
SOFTWARE
ARG A:6 , TRP A:24 , SER A:28
BINDING SITE FOR RESIDUE ACT A 502
8
AC8
SOFTWARE
GLU A:124 , HIS A:177 , GLU A:193 , ASN A:197 , ZN A:213 , HOH A:323
BINDING SITE FOR RESIDUE ACT A 503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: BH4_1 (A:4-24)
2: BH4_2 (A:5-24)
3: BH3 (A:86-100)
4: BCL2_FAMILY (A:90-190)
5: BH1 (A:130-148)
6: BH2 (A:181-192)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH4_1
PS01260
Apoptosis regulator, Bcl-2 family BH4 motif signature.
B2CL1_HUMAN
4-24
1
A:4-24
2
BH4_2
PS50063
Apoptosis regulator, Bcl-2 family BH4 motif profile.
B2CL1_HUMAN
5-24
1
A:5-24
3
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
B2CL1_HUMAN
86-100
1
A:86-100
4
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2CL1_HUMAN
90-190
1
A:90-190
5
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2CL1_HUMAN
130-148
1
A:130-148
6
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2CL1_HUMAN
181-192
1
A:181-192
[
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Exons
(2, 2)
Info
All Exons
Exon 1.3a (A:1-188 (gaps))
Exon 1.4c (A:189-199)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4c
3: Boundary 1.4c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376062
3a
ENSE00001469279
chr20:
30310400-30309458
943
B2CL1_HUMAN
1-188
188
1
A:1-188 (gaps)
188
1.4c
ENST00000376062
4c
ENSE00001469296
chr20:
30253889-30252255
1635
B2CL1_HUMAN
189-233
45
1
A:189-199
11
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3sp7a_ (A:)
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(
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Organisms
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(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
Apoptosis regulator Bcl-xL
(38)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d3sp7a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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