PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3SOM
Asym. Unit
Info
Asym.Unit (702 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 10 (54 KB)
Biol.Unit 11 (53 KB)
Biol.Unit 12 (55 KB)
Biol.Unit 13 (54 KB)
Biol.Unit 14 (54 KB)
Biol.Unit 15 (54 KB)
Biol.Unit 16 (54 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (53 KB)
Biol.Unit 4 (53 KB)
Biol.Unit 5 (54 KB)
Biol.Unit 6 (54 KB)
Biol.Unit 7 (54 KB)
Biol.Unit 8 (54 KB)
Biol.Unit 9 (54 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MMACHC
Authors
:
T. Krojer, D. S. Froese, F. Von Delft, J. R. Muniz, C. Gileadi, M. Vollma C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, R. A. Gravel, W. W U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
30 Jun 11 (Deposition) - 27 Jul 11 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Biol. Unit 13: M (1x)
Biol. Unit 14: N (1x)
Biol. Unit 15: O (1x)
Biol. Unit 16: P (1x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc, Cblc, Organic Aciduria, Inborn Errors Of Metabolism, Cobalamin, Vitamin B12, Cobalt(Iii), Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Froese, T. Krojer, X. Wu, R. Shrestha, W. Kiyani, F. Von Delft, R. A. Gravel, U. Oppermann, W. W. Yue
Structure Of Mmachc Reveals An Arginine-Rich Pocket And A Domain-Swapped Dimer For Its B12 Processing Function.
Biochemistry V. 51 5083 2012
[
close entry info
]
Hetero Components
(6, 99)
Info
All Hetero Components
1a: 5'-DEOXYADENOSINE (5ADa)
1b: 5'-DEOXYADENOSINE (5ADb)
1c: 5'-DEOXYADENOSINE (5ADc)
1d: 5'-DEOXYADENOSINE (5ADd)
1e: 5'-DEOXYADENOSINE (5ADe)
1f: 5'-DEOXYADENOSINE (5ADf)
1g: 5'-DEOXYADENOSINE (5ADg)
1h: 5'-DEOXYADENOSINE (5ADh)
1i: 5'-DEOXYADENOSINE (5ADi)
1j: 5'-DEOXYADENOSINE (5ADj)
1k: 5'-DEOXYADENOSINE (5ADk)
1l: 5'-DEOXYADENOSINE (5ADl)
1m: 5'-DEOXYADENOSINE (5ADm)
1n: 5'-DEOXYADENOSINE (5ADn)
1o: 5'-DEOXYADENOSINE (5ADo)
1p: 5'-DEOXYADENOSINE (5ADp)
1q: 5'-DEOXYADENOSINE (5ADq)
1r: 5'-DEOXYADENOSINE (5ADr)
2a: COBALAMIN (B12a)
2b: COBALAMIN (B12b)
2c: COBALAMIN (B12c)
2d: COBALAMIN (B12d)
2e: COBALAMIN (B12e)
2f: COBALAMIN (B12f)
2g: COBALAMIN (B12g)
2h: COBALAMIN (B12h)
2i: COBALAMIN (B12i)
2j: COBALAMIN (B12j)
2k: COBALAMIN (B12k)
2l: COBALAMIN (B12l)
2m: COBALAMIN (B12m)
2n: COBALAMIN (B12n)
2o: COBALAMIN (B12o)
2p: COBALAMIN (B12p)
3a: 2-AMINO-ETHANETHIOL (DHLa)
3b: 2-AMINO-ETHANETHIOL (DHLb)
3c: 2-AMINO-ETHANETHIOL (DHLc)
3d: 2-AMINO-ETHANETHIOL (DHLd)
3e: 2-AMINO-ETHANETHIOL (DHLe)
3f: 2-AMINO-ETHANETHIOL (DHLf)
3g: 2-AMINO-ETHANETHIOL (DHLg)
3h: 2-AMINO-ETHANETHIOL (DHLh)
3i: 2-AMINO-ETHANETHIOL (DHLi)
3j: 2-AMINO-ETHANETHIOL (DHLj)
3k: 2-AMINO-ETHANETHIOL (DHLk)
3l: 2-AMINO-ETHANETHIOL (DHLl)
3m: 2-AMINO-ETHANETHIOL (DHLm)
3n: 2-AMINO-ETHANETHIOL (DHLn)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
5a: CITRATE ANION (FLCa)
5b: CITRATE ANION (FLCb)
5c: CITRATE ANION (FLCc)
5d: CITRATE ANION (FLCd)
5e: CITRATE ANION (FLCe)
5f: CITRATE ANION (FLCf)
5g: CITRATE ANION (FLCg)
5h: CITRATE ANION (FLCh)
5i: CITRATE ANION (FLCi)
5j: CITRATE ANION (FLCj)
5k: CITRATE ANION (FLCk)
5l: CITRATE ANION (FLCl)
5m: CITRATE ANION (FLCm)
5n: CITRATE ANION (FLCn)
5o: CITRATE ANION (FLCo)
5p: CITRATE ANION (FLCp)
6a: SELENOMETHIONINE (MSEa)
6aa: SELENOMETHIONINE (MSEaa)
6ab: SELENOMETHIONINE (MSEab)
6ac: SELENOMETHIONINE (MSEac)
6ad: SELENOMETHIONINE (MSEad)
6ae: SELENOMETHIONINE (MSEae)
6af: SELENOMETHIONINE (MSEaf)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
6y: SELENOMETHIONINE (MSEy)
6z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5AD
18
Ligand/Ion
5'-DEOXYADENOSINE
2
B12
16
Ligand/Ion
COBALAMIN
3
DHL
14
Ligand/Ion
2-AMINO-ETHANETHIOL
4
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
5
FLC
16
Ligand/Ion
CITRATE ANION
6
MSE
32
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(67, 67)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:34 , LEU A:35 , PRO A:36 , ASP A:104 , PRO A:113 , ILE A:115 , ALA A:117 , GLN A:118 , THR A:119 , HIS A:122 , TYR A:129 , GLN A:131 , ARG A:144 , SER A:146 , CYS A:149 , ILE A:160 , PHE A:196 , TRP A:200 , TYR A:205 , HOH A:284 , HOH A:290 , HOH A:373 , FLC A:501 , HOH A:550 , HOH A:585 , HOH A:596 , HOH A:758 , HOH A:820 , HOH A:881 , HOH A:1149 , ARG B:111 , 5AD B:401
BINDING SITE FOR RESIDUE B12 A 301
02
AC2
SOFTWARE
PHE A:158 , ARG A:161 , ARG A:206 , TYR A:215 , PHE A:223 , ARG A:230 , B12 A:301 , HOH A:547 , HOH A:706 , HOH A:845 , 5AD B:401
BINDING SITE FOR RESIDUE FLC A 501
03
AC3
SOFTWARE
CYS A:182 , VAL A:209
BINDING SITE FOR RESIDUE DHL A 601
04
AC4
SOFTWARE
PRO A:109 , ASN A:110 , ARG A:111 , HOH A:833 , B12 B:301 , FLC B:501 , HOH B:576
BINDING SITE FOR RESIDUE 5AD A 401
05
AC5
SOFTWARE
B12 A:301 , FLC A:501 , HOH A:645 , PRO B:109 , ASN B:110 , ARG B:111
BINDING SITE FOR RESIDUE 5AD B 401
06
AC6
SOFTWARE
ARG A:111 , 5AD A:401 , LEU B:34 , LEU B:35 , PRO B:36 , ASP B:104 , PRO B:113 , ILE B:115 , ALA B:117 , GLN B:118 , THR B:119 , HIS B:122 , TYR B:129 , GLN B:131 , ARG B:144 , SER B:146 , CYS B:149 , ILE B:160 , PHE B:196 , TRP B:200 , TYR B:205 , HOH B:288 , HOH B:289 , HOH B:416 , FLC B:501 , HOH B:827 , HOH B:831 , HOH B:980 , HOH B:987
BINDING SITE FOR RESIDUE B12 B 301
07
AC7
SOFTWARE
5AD A:401 , VAL B:79 , PHE B:158 , ARG B:161 , ARG B:206 , TYR B:215 , PHE B:223 , ARG B:230 , B12 B:301 , HOH B:580 , HOH B:613 , HOH B:785
BINDING SITE FOR RESIDUE FLC B 501
08
AC8
SOFTWARE
LEU C:34 , LEU C:35 , PRO C:36 , ASP C:104 , PRO C:113 , ILE C:115 , ALA C:117 , GLN C:118 , THR C:119 , HIS C:122 , TYR C:129 , GLN C:131 , ARG C:144 , SER C:146 , CYS C:149 , ILE C:160 , PHE C:196 , TRP C:200 , HOH C:283 , HOH C:287 , HOH C:368 , FLC C:501 , HOH C:536 , HOH C:606 , HOH C:791 , HOH C:964 , HOH C:1166 , HOH C:1365 , ARG D:111 , 5AD D:401
BINDING SITE FOR RESIDUE B12 C 301
09
AC9
SOFTWARE
PHE C:158 , ARG C:161 , ARG C:206 , TYR C:215 , PHE C:223 , ARG C:230 , B12 C:301 , 5AD D:401
BINDING SITE FOR RESIDUE FLC C 501
10
BC1
SOFTWARE
PRO C:152 , CYS C:182
BINDING SITE FOR RESIDUE DHL C 601
11
BC2
SOFTWARE
PRO C:109 , ASN C:110 , ARG C:111 , HOH C:1613 , B12 D:301 , HOH D:498 , FLC D:501
BINDING SITE FOR RESIDUE 5AD C 401
12
BC3
SOFTWARE
B12 C:301 , HOH C:413 , FLC C:501 , PRO D:109 , ASN D:110 , ARG D:111
BINDING SITE FOR RESIDUE 5AD D 401
13
BC4
SOFTWARE
ARG C:111 , 5AD C:401 , LEU D:34 , LEU D:35 , PRO D:36 , ASP D:104 , PRO D:113 , ILE D:115 , ALA D:117 , GLN D:118 , THR D:119 , HIS D:122 , TYR D:129 , GLN D:131 , ARG D:144 , SER D:146 , CYS D:149 , ILE D:160 , PHE D:196 , TRP D:200 , TYR D:205 , HOH D:303 , HOH D:304 , HOH D:312 , HOH D:346 , HOH D:493 , FLC D:501 , HOH D:559 , HOH D:584 , HOH D:830 , HOH D:914 , HOH D:1033
BINDING SITE FOR RESIDUE B12 D 301
14
BC5
SOFTWARE
5AD C:401 , PHE D:158 , ARG D:161 , ARG D:206 , TYR D:215 , PHE D:223 , ARG D:230 , HOH D:284 , B12 D:301 , HOH D:377 , HOH D:667
BINDING SITE FOR RESIDUE FLC D 501
15
BC6
SOFTWARE
PRO D:152 , CYS D:182 , VAL D:209
BINDING SITE FOR RESIDUE DHL D 601
16
BC7
SOFTWARE
LEU E:34 , LEU E:35 , PRO E:36 , ASP E:104 , PRO E:113 , ILE E:115 , ALA E:117 , GLN E:118 , THR E:119 , HIS E:122 , TYR E:129 , GLN E:131 , ARG E:144 , SER E:146 , CYS E:149 , ILE E:160 , PHE E:196 , TRP E:200 , TYR E:205 , EDO E:283 , HOH E:285 , HOH E:289 , HOH E:293 , HOH E:295 , HOH E:356 , FLC E:501 , HOH E:582 , HOH E:657 , HOH E:757 , HOH E:1019 , HOH E:1110 , 5AD F:401
BINDING SITE FOR RESIDUE B12 E 301
17
BC8
SOFTWARE
PHE E:158 , ARG E:161 , ARG E:206 , TYR E:215 , PHE E:223 , ARG E:230 , HOH E:290 , B12 E:301 , HOH E:632 , 5AD F:401
BINDING SITE FOR RESIDUE FLC E 501
18
BC9
SOFTWARE
PRO E:109 , ASN E:110 , ARG E:111 , HOH F:293 , B12 F:301 , FLC F:501
BINDING SITE FOR RESIDUE 5AD E 401
19
CC1
SOFTWARE
LEU E:34 , LEU E:35 , PRO E:36 , B12 E:301
BINDING SITE FOR RESIDUE EDO E 283
20
CC2
SOFTWARE
HOH E:287 , B12 E:301 , FLC E:501 , PRO F:109 , ASN F:110 , ARG F:111
BINDING SITE FOR RESIDUE 5AD F 401
21
CC3
SOFTWARE
5AD E:401 , LEU F:34 , LEU F:35 , PRO F:36 , ASP F:104 , PRO F:113 , ILE F:115 , ALA F:117 , GLN F:118 , THR F:119 , HIS F:122 , TYR F:129 , GLN F:131 , ARG F:144 , SER F:146 , CYS F:149 , ILE F:160 , PHE F:196 , TRP F:200 , HOH F:283 , HOH F:285 , HOH F:286 , HOH F:288 , HOH F:297 , FLC F:501 , HOH F:620 , HOH F:924 , HOH F:1002 , HOH F:1114 , HOH F:1199 , HOH F:1262
BINDING SITE FOR RESIDUE B12 F 301
22
CC4
SOFTWARE
5AD E:401 , PHE F:158 , ALA F:159 , ARG F:161 , ARG F:206 , TYR F:215 , PHE F:223 , ARG F:230 , B12 F:301 , HOH F:590 , HOH F:1109
BINDING SITE FOR RESIDUE FLC F 501
23
CC5
SOFTWARE
PRO F:152 , CYS F:182
BINDING SITE FOR RESIDUE DHL F 601
24
CC6
SOFTWARE
LEU G:34 , LEU G:35 , PRO G:36 , ASP G:104 , PRO G:113 , ILE G:115 , ALA G:117 , GLN G:118 , THR G:119 , HIS G:122 , TYR G:129 , GLN G:131 , ARG G:144 , SER G:146 , CYS G:149 , ILE G:160 , PHE G:196 , TRP G:200 , 5AD G:283 , HOH G:285 , HOH G:287 , HOH G:290 , HOH G:303 , HOH G:306 , HOH G:311 , HOH G:344 , HOH G:494 , FLC G:501 , HOH G:658 , HOH G:893 , HOH G:1330 , HOH G:2051 , 5AD H:401
BINDING SITE FOR RESIDUE B12 G 301
25
CC7
SOFTWARE
PHE G:158 , ARG G:161 , ARG G:206 , TYR G:215 , PHE G:223 , ARG G:230 , HOH G:295 , B12 G:301 , HOH G:475 , HOH G:937 , 5AD H:401
BINDING SITE FOR RESIDUE FLC G 501
26
CC8
SOFTWARE
PRO G:152 , HIS G:180 , CYS G:182
BINDING SITE FOR RESIDUE DHL G 601
27
CC9
SOFTWARE
PRO G:109 , ASN G:110 , ARG G:111 , B12 H:301 , FLC H:501
BINDING SITE FOR RESIDUE 5AD G 401
28
DC1
SOFTWARE
TRP G:30 , GLU G:33 , HIS G:122 , VAL G:123 , PRO G:176 , B12 G:301
BINDING SITE FOR RESIDUE 5AD G 283
29
DC2
SOFTWARE
HOH G:298 , B12 G:301 , FLC G:501 , PRO H:109 , ASN H:110 , ARG H:111
BINDING SITE FOR RESIDUE 5AD H 401
30
DC3
SOFTWARE
ARG G:111 , 5AD G:401 , LEU H:34 , LEU H:35 , PRO H:36 , ASP H:104 , PRO H:113 , ILE H:115 , ALA H:117 , GLN H:118 , THR H:119 , HIS H:122 , TYR H:129 , GLN H:131 , ARG H:144 , SER H:146 , CYS H:149 , ILE H:160 , PHE H:196 , TRP H:200 , HOH H:283 , HOH H:284 , HOH H:288 , HOH H:293 , HOH H:295 , HOH H:298 , HOH H:304 , HOH H:497 , FLC H:501 , HOH H:627 , HOH H:948 , HOH H:1096 , HOH H:2010 , HOH H:2076
BINDING SITE FOR RESIDUE B12 H 301
31
DC4
SOFTWARE
5AD G:401 , PHE H:158 , ARG H:161 , ARG H:206 , TYR H:215 , PHE H:223 , ARG H:230 , B12 H:301 , HOH H:325 , HOH H:528
BINDING SITE FOR RESIDUE FLC H 501
32
DC5
SOFTWARE
PRO G:184 , THR G:185 , HOH G:1020 , PRO H:152 , CYS H:182
BINDING SITE FOR RESIDUE DHL H 601
33
DC6
SOFTWARE
LEU I:34 , LEU I:35 , PRO I:36 , ASP I:104 , PRO I:113 , ILE I:115 , ALA I:117 , GLN I:118 , THR I:119 , HIS I:122 , TYR I:129 , GLN I:131 , ARG I:144 , SER I:146 , CYS I:149 , ILE I:160 , PHE I:196 , TRP I:200 , HOH I:285 , HOH I:286 , HOH I:290 , HOH I:299 , HOH I:300 , HOH I:326 , FLC I:501 , HOH I:529 , HOH I:875 , HOH I:995 , HOH I:1024 , HOH I:1030 , HOH I:1121 , HOH I:2063 , ARG J:111 , 5AD J:401
BINDING SITE FOR RESIDUE B12 I 301
34
DC7
SOFTWARE
PHE I:158 , ARG I:161 , ARG I:206 , TYR I:215 , PHE I:223 , ARG I:230 , HOH I:296 , B12 I:301 , HOH I:302 , HOH I:790 , 5AD J:401
BINDING SITE FOR RESIDUE FLC I 501
35
DC8
SOFTWARE
PRO I:152 , CYS I:182 , ASP J:188 , HOH J:385
BINDING SITE FOR RESIDUE DHL I 601
36
DC9
SOFTWARE
PRO I:109 , ASN I:110 , ARG I:111 , HOH I:900 , HOH J:288 , B12 J:301 , FLC J:501
BINDING SITE FOR RESIDUE 5AD I 401
37
EC1
SOFTWARE
TRP I:30 , GLU I:33 , HIS I:122 , VAL I:123 , TYR I:128
BINDING SITE FOR RESIDUE 5AD I 283
38
EC2
SOFTWARE
B12 I:301 , FLC I:501 , HOH I:652 , PRO J:109 , ASN J:110 , ARG J:111
BINDING SITE FOR RESIDUE 5AD J 401
39
EC3
SOFTWARE
ARG I:111 , 5AD I:401 , LEU J:34 , LEU J:35 , PRO J:36 , ASP J:104 , PRO J:113 , ILE J:115 , ALA J:117 , GLN J:118 , THR J:119 , HIS J:122 , TYR J:129 , GLN J:131 , ARG J:144 , SER J:146 , CYS J:149 , ILE J:160 , PHE J:196 , TRP J:200 , HOH J:283 , HOH J:285 , HOH J:289 , HOH J:294 , HOH J:297 , HOH J:438 , HOH J:460 , FLC J:501 , HOH J:545 , HOH J:612 , HOH J:1056 , HOH J:1669
BINDING SITE FOR RESIDUE B12 J 301
40
EC4
SOFTWARE
5AD I:401 , PHE J:158 , ARG J:161 , ARG J:206 , TYR J:215 , PHE J:223 , ARG J:230 , HOH J:293 , B12 J:301 , HOH J:360 , HOH J:690
BINDING SITE FOR RESIDUE FLC J 501
41
EC5
SOFTWARE
PRO J:152 , CYS J:182
BINDING SITE FOR RESIDUE DHL J 601
42
EC6
SOFTWARE
LEU K:34 , LEU K:35 , PRO K:36 , ASP K:104 , PRO K:113 , ILE K:115 , ALA K:117 , GLN K:118 , THR K:119 , HIS K:122 , TYR K:129 , GLN K:131 , ARG K:144 , SER K:146 , CYS K:149 , ILE K:160 , PHE K:196 , TRP K:200 , HOH K:285 , HOH K:288 , HOH K:289 , HOH K:294 , HOH K:297 , HOH K:459 , FLC K:501 , HOH K:794 , HOH K:797 , HOH K:1542 , ARG L:111 , 5AD L:401
BINDING SITE FOR RESIDUE B12 K 301
43
EC7
SOFTWARE
PHE K:158 , ARG K:161 , ARG K:206 , TYR K:215 , PHE K:223 , ARG K:230 , HOH K:290 , B12 K:301 , HOH K:1306 , 5AD L:401
BINDING SITE FOR RESIDUE FLC K 501
44
EC8
SOFTWARE
PRO K:152 , CYS K:182 , PRO L:184 , HOH L:328
BINDING SITE FOR RESIDUE DHL K 601
45
EC9
SOFTWARE
PRO K:109 , ASN K:110 , ARG K:111 , HOH K:1049 , HOH K:1335 , HOH L:287 , B12 L:301 , FLC L:501
BINDING SITE FOR RESIDUE 5AD K 401
46
FC1
SOFTWARE
B12 K:301 , HOH K:472 , FLC K:501 , PRO L:109 , ASN L:110 , ARG L:111
BINDING SITE FOR RESIDUE 5AD L 401
47
FC2
SOFTWARE
ARG K:111 , 5AD K:401 , LEU L:34 , LEU L:35 , PRO L:36 , ASP L:104 , PRO L:113 , ILE L:115 , ALA L:117 , GLN L:118 , THR L:119 , HIS L:122 , TYR L:129 , GLN L:131 , ARG L:144 , SER L:146 , CYS L:149 , ILE L:160 , PHE L:196 , TRP L:200 , HOH L:284 , HOH L:289 , HOH L:290 , HOH L:300 , HOH L:376 , FLC L:501 , HOH L:522 , HOH L:940 , HOH L:983 , HOH L:1077 , HOH L:1202 , HOH L:1273 , HOH L:2053
BINDING SITE FOR RESIDUE B12 L 301
48
FC3
SOFTWARE
5AD K:401 , PHE L:158 , ARG L:161 , ARG L:206 , TYR L:215 , PHE L:223 , ARG L:230 , HOH L:286 , HOH L:296 , B12 L:301 , HOH L:743 , HOH L:825
BINDING SITE FOR RESIDUE FLC L 501
49
FC4
SOFTWARE
PRO L:152 , CYS L:182
BINDING SITE FOR RESIDUE DHL L 601
50
FC5
SOFTWARE
LEU M:34 , LEU M:35 , PRO M:36 , ASP M:104 , PRO M:113 , ILE M:115 , ALA M:117 , GLN M:118 , THR M:119 , HIS M:122 , TYR M:129 , GLN M:131 , ARG M:144 , SER M:146 , CYS M:149 , ILE M:160 , PHE M:196 , TRP M:200 , TYR M:205 , HOH M:284 , HOH M:285 , HOH M:286 , HOH M:287 , HOH M:295 , HOH M:471 , FLC M:501 , HOH M:514 , HOH M:2055 , ARG N:111 , 5AD N:401
BINDING SITE FOR RESIDUE B12 M 301
51
FC6
SOFTWARE
PHE M:158 , ARG M:161 , ARG M:206 , TYR M:215 , PHE M:223 , ARG M:230 , B12 M:301 , HOH M:1282 , HOH M:1342 , HOH M:2025 , 5AD N:401
BINDING SITE FOR RESIDUE FLC M 501
52
FC7
SOFTWARE
PRO M:152 , CYS M:182
BINDING SITE FOR RESIDUE DHL M 601
53
FC8
SOFTWARE
PRO M:109 , ASN M:110 , ARG M:111 , HOH N:294 , B12 N:301 , FLC N:501
BINDING SITE FOR RESIDUE 5AD M 401
54
FC9
SOFTWARE
HOH M:300 , B12 M:301 , FLC M:501 , PRO N:109 , ASN N:110 , ARG N:111 , HOH N:890
BINDING SITE FOR RESIDUE 5AD N 401
55
GC1
SOFTWARE
ARG M:111 , 5AD M:401 , LEU N:34 , LEU N:35 , PRO N:36 , ASP N:104 , PRO N:113 , ILE N:115 , ALA N:117 , GLN N:118 , THR N:119 , HIS N:122 , TYR N:129 , GLN N:131 , ARG N:144 , SER N:146 , CYS N:149 , ILE N:160 , PHE N:196 , TRP N:200 , HOH N:286 , HOH N:288 , HOH N:290 , HOH N:297 , HOH N:299 , HOH N:411 , HOH N:417 , FLC N:501 , HOH N:725 , HOH N:795 , HOH N:1071 , HOH N:2040
BINDING SITE FOR RESIDUE B12 N 301
56
GC2
SOFTWARE
5AD M:401 , PHE N:158 , ARG N:161 , ARG N:206 , TYR N:215 , PHE N:223 , ARG N:230 , B12 N:301 , HOH N:440 , HOH N:984 , HOH N:1326
BINDING SITE FOR RESIDUE FLC N 501
57
GC3
SOFTWARE
PRO M:184 , HOH M:324 , HOH M:1381 , PRO N:152 , CYS N:182
BINDING SITE FOR RESIDUE DHL N 601
58
GC4
SOFTWARE
LEU O:34 , LEU O:35 , PRO O:36 , ASP O:104 , PRO O:113 , ILE O:115 , ALA O:117 , GLN O:118 , THR O:119 , HIS O:122 , TYR O:129 , GLN O:131 , ARG O:144 , SER O:146 , CYS O:149 , ILE O:160 , PHE O:196 , TRP O:200 , HOH O:287 , HOH O:290 , HOH O:293 , HOH O:296 , HOH O:297 , HOH O:299 , HOH O:303 , HOH O:391 , FLC O:501 , HOH O:811 , HOH O:1026 , HOH O:1088 , HOH O:1229 , 5AD P:401
BINDING SITE FOR RESIDUE B12 O 301
59
GC5
SOFTWARE
PHE O:158 , ARG O:161 , ARG O:206 , TYR O:215 , PHE O:223 , ARG O:230 , B12 O:301 , HOH O:462 , HOH O:2042 , 5AD P:401
BINDING SITE FOR RESIDUE FLC O 501
60
GC6
SOFTWARE
PRO O:152 , HIS O:180 , CYS O:182
BINDING SITE FOR RESIDUE DHL O 601
61
GC7
SOFTWARE
PRO O:109 , ASN O:110 , ARG O:111 , HOH O:1586 , B12 P:301 , FLC P:501 , HOH P:2023
BINDING SITE FOR RESIDUE 5AD O 401
62
GC8
SOFTWARE
B12 O:301 , FLC O:501 , PRO P:109 , ASN P:110 , ARG P:111 , HOH P:1057
BINDING SITE FOR RESIDUE 5AD P 401
63
GC9
SOFTWARE
ARG O:111 , 5AD O:401 , LEU P:34 , LEU P:35 , PRO P:36 , ASP P:104 , PRO P:113 , ILE P:115 , ALA P:117 , GLN P:118 , THR P:119 , HIS P:122 , TYR P:129 , GLN P:131 , ARG P:144 , SER P:146 , CYS P:149 , ILE P:160 , PHE P:196 , TRP P:200 , HOH P:286 , HOH P:287 , HOH P:292 , HOH P:347 , HOH P:355 , HOH P:463 , FLC P:501 , HOH P:527 , HOH P:626 , HOH P:977 , HOH P:1329 , HOH P:2031 , HOH P:2057
BINDING SITE FOR RESIDUE B12 P 301
64
HC1
SOFTWARE
5AD O:401 , PHE P:158 , ARG P:161 , ARG P:206 , TYR P:215 , PHE P:223 , ARG P:230 , B12 P:301 , HOH P:322 , HOH P:369
BINDING SITE FOR RESIDUE FLC P 501
65
HC2
SOFTWARE
PRO O:184 , HOH O:818 , PRO P:152 , CYS P:182
BINDING SITE FOR RESIDUE DHL P 601
66
HC3
SOFTWARE
THR P:185 , ARG P:186 , ALA P:187
BINDING SITE FOR RESIDUE EDO P 283
67
HC4
SOFTWARE
ARG P:91 , LEU P:94 , LEU P:97 , GLN P:98 , ILE P:99
BINDING SITE FOR RESIDUE EDO P 284
[
close Site info
]
SAPs(SNPs)/Variants
(14, 224)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_024770 (Q27R, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
02: VAR_024771 (L116P, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
03: VAR_024772 (H122R, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
04: VAR_024773 (Y130H, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
05: VAR_024774 (G147A, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
06: VAR_024775 (G147D, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
07: VAR_024776 (G156D, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
08: VAR_024777 (W157C, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
09: VAR_024778 (R161G, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
10: VAR_024779 (R161Q, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
11: VAR_024780 (R189S, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
12: VAR_024781 (L193P, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
13: VAR_024782 (R206P, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
14: VAR_024783 (R206W, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_024770
Q
27
R
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
Q
27
R
02
UniProt
VAR_024771
L
116
P
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
L
116
P
03
UniProt
VAR_024772
H
122
R
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
H
122
R
04
UniProt
VAR_024773
Y
130
H
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
Y
130
H
05
UniProt
VAR_024774
G
147
A
MMAC_HUMAN
Disease (MMAHCC)
140522266
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
G
147
A
06
UniProt
VAR_024775
G
147
D
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
G
147
D
07
UniProt
VAR_024776
G
156
D
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
G
156
D
08
UniProt
VAR_024777
W
157
C
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
W
157
C
09
UniProt
VAR_024778
R
161
G
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
R
161
G
10
UniProt
VAR_024779
R
161
Q
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
R
161
Q
11
UniProt
VAR_024780
R
189
S
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
R
189
S
12
UniProt
VAR_024781
L
193
P
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
L
193
P
13
UniProt
VAR_024782
R
206
P
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
R
206
P
14
UniProt
VAR_024783
R
206
W
MMAC_HUMAN
Disease (MMAHCC)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P
R
206
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (702 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 10 (54 KB)
Header - Biol.Unit 10
Biol.Unit 11 (53 KB)
Header - Biol.Unit 11
Biol.Unit 12 (55 KB)
Header - Biol.Unit 12
Biol.Unit 13 (54 KB)
Header - Biol.Unit 13
Biol.Unit 14 (54 KB)
Header - Biol.Unit 14
Biol.Unit 15 (54 KB)
Header - Biol.Unit 15
Biol.Unit 16 (54 KB)
Header - Biol.Unit 16
Biol.Unit 2 (53 KB)
Header - Biol.Unit 2
Biol.Unit 3 (53 KB)
Header - Biol.Unit 3
Biol.Unit 4 (53 KB)
Header - Biol.Unit 4
Biol.Unit 5 (54 KB)
Header - Biol.Unit 5
Biol.Unit 6 (54 KB)
Header - Biol.Unit 6
Biol.Unit 7 (54 KB)
Header - Biol.Unit 7
Biol.Unit 8 (54 KB)
Header - Biol.Unit 8
Biol.Unit 9 (54 KB)
Header - Biol.Unit 9
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3SOM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help