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Getting 'Exon' information from database.
3SOG
Asym. Unit
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Asym.Unit (36 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BAR DOMAIN OF HUMAN AMPHIPHYSIN, ISOFORM 1
Authors
:
C. K. Allerston, T. Krojer, A. Chaikuad, C. D. O. Cooper, G. Berridge, P. M. Vollmar, F. Von Delft, C. H. Arrowsmith, J. Weigelt, A. Edwards, C. O. Gileadi, Structural Genomics Consortium (Sgc)
Date
:
30 Jun 11 (Deposition) - 13 Jul 11 (Release) - 03 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Invagination Knobs-In-Holes Curvature, Alpha Helix, Plasma Membrane, Structural Genomics, Structural Genomics Consortium, Sgc, Structural Protein
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Reference
:
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
K
2
Ligand/Ion
POTASSIUM ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:63 , MET A:70 , SER A:74 , TRP A:106 , GLU A:213 , HIS A:217
BINDING SITE FOR RESIDUE EDO A 1
2
AC2
SOFTWARE
GLU A:213
BINDING SITE FOR RESIDUE K A 237
3
AC3
SOFTWARE
GLN A:71 , GLU A:72
BINDING SITE FOR RESIDUE K A 238
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_053004 (K218E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_053004
K
218
E
AMPH_HUMAN
Polymorphism
35166354
A
K
218
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(8, 8)
Info
All Exons
Exon 1.2 (A:36-50)
Exon 1.3 (A:51-69)
Exon 1.4 (A:69-100)
Exon 1.5 (A:101-132)
Exon 1.6 (A:133-168 (gaps))
Exon 1.7 (A:169-197)
Exon 1.8 (A:197-222)
Exon 1.9 (A:223-235)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000356264
1a
ENSE00001865805
chr7:
38671167-38670883
285
AMPH_HUMAN
1-23
23
0
-
-
1.2
ENST00000356264
2
ENSE00001646088
chr7:
38574611-38574531
81
AMPH_HUMAN
24-50
27
1
A:36-50
15
1.3
ENST00000356264
3
ENSE00001611965
chr7:
38543304-38543250
55
AMPH_HUMAN
51-69
19
1
A:51-69
19
1.4
ENST00000356264
4
ENSE00001792437
chr7:
38534127-38534033
95
AMPH_HUMAN
69-100
32
1
A:69-100
32
1.5
ENST00000356264
5
ENSE00001770901
chr7:
38530745-38530650
96
AMPH_HUMAN
101-132
32
1
A:101-132
32
1.6
ENST00000356264
6
ENSE00001607557
chr7:
38516569-38516462
108
AMPH_HUMAN
133-168
36
1
A:133-168 (gaps)
36
1.7
ENST00000356264
7
ENSE00001792678
chr7:
38515016-38514931
86
AMPH_HUMAN
169-197
29
1
A:169-197
29
1.8
ENST00000356264
8
ENSE00001727100
chr7:
38505848-38505773
76
AMPH_HUMAN
197-222
26
1
A:197-222
26
1.9
ENST00000356264
9
ENSE00001723487
chr7:
38505149-38505067
83
AMPH_HUMAN
223-250
28
1
A:223-235
13
1.10
ENST00000356264
10
ENSE00001772878
chr7:
38502713-38502575
139
AMPH_HUMAN
250-296
47
0
-
-
1.11
ENST00000356264
11
ENSE00001605286
chr7:
38501011-38500883
129
AMPH_HUMAN
297-339
43
0
-
-
1.12
ENST00000356264
12
ENSE00001784795
chr7:
38475988-38475872
117
AMPH_HUMAN
340-378
39
0
-
-
1.13
ENST00000356264
13
ENSE00001023141
chr7:
38471812-38471789
24
AMPH_HUMAN
379-386
8
0
-
-
1.14b
ENST00000356264
14b
ENSE00001363931
chr7:
38469465-38469442
24
AMPH_HUMAN
387-394
8
0
-
-
1.16
ENST00000356264
16
ENSE00001228876
chr7:
38466586-38466554
33
AMPH_HUMAN
395-405
11
0
-
-
1.17
ENST00000356264
17
ENSE00000832438
chr7:
38462077-38462021
57
AMPH_HUMAN
406-424
19
0
-
-
1.19b
ENST00000356264
19b
ENSE00000678924
chr7:
38457550-38457425
126
AMPH_HUMAN
425-466
42
0
-
-
1.20b
ENST00000356264
20b
ENSE00001656509
chr7:
38433814-38433605
210
AMPH_HUMAN
467-536
70
0
-
-
1.22c
ENST00000356264
22c
ENSE00002201938
chr7:
38431618-38431349
270
AMPH_HUMAN
537-626
90
0
-
-
1.23b
ENST00000356264
23b
ENSE00001730994
chr7:
38429506-38429405
102
AMPH_HUMAN
627-660
34
0
-
-
1.24c
ENST00000356264
24c
ENSE00001602804
chr7:
38424526-38423305
1222
AMPH_HUMAN
661-695
35
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3soga_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
BAR/IMD domain-like
(27)
Superfamily
:
BAR/IMD domain-like
(27)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3soga_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (36 KB)
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