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3SMC
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) WITH COVALENTLY BOUND L-SULFORAPHANE
Authors
:
G. V. Crichlow, E. J. Lolis
Date
:
27 Jun 11 (Deposition) - 03 Oct 12 (Release) - 20 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Cytokine, Receptor Binding, Secreted, Isomerase-Isomerase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. V. Crichlow, C. Fan, C. Keeler, M. Hodsdon, E. J. Lolis
Structural Interactions Dictate The Kinetics Of Macrophage Migration Inhibitory Factor Inhibition By Different Cancer-Preventive Isothiocyanates.
Biochemistry V. 51 7506 2012
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
2a: N-{4-[(R)-METHYLSULFINYL]BUTYL}THI... (LE3a)
2b: N-{4-[(R)-METHYLSULFINYL]BUTYL}THI... (LE3b)
2c: N-{4-[(R)-METHYLSULFINYL]BUTYL}THI... (LE3c)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
2
LE3
3
Ligand/Ion
N-{4-[(R)-METHYLSULFINYL]BUTYL}THIOFORMAMIDE
3
NA
4
Ligand/Ion
SODIUM ION
4
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:1 , MET A:2 , LYS A:32 , TYR A:36 , ILE A:64 , ASP A:92 , PHE A:113 , HOH A:366 , TYR C:95
BINDING SITE FOR RESIDUE LE3 A 200
02
AC2
SOFTWARE
ASN A:102 , ASN A:105 , HOH C:264
BINDING SITE FOR RESIDUE CL A 702
03
AC3
SOFTWARE
GLN A:24 , HOH A:431 , HOH B:258
BINDING SITE FOR RESIDUE CL A 704
04
AC4
SOFTWARE
GLY A:68 , GLY A:69 , ALA A:70 , GLN A:71
BINDING SITE FOR RESIDUE CL A 707
05
AC5
SOFTWARE
ASP A:100 , HOH A:238 , HOH A:390 , HOH A:549 , HOH A:576
BINDING SITE FOR RESIDUE NA A 802
06
AC6
SOFTWARE
HOH A:288 , HOH A:345 , HOH B:280 , HOH B:349 , HOH C:313 , HOH C:372
BINDING SITE FOR RESIDUE NA A 804
07
AC7
SOFTWARE
PRO A:15 , ASP A:16 , HOH A:568 , HOH A:599 , ARG B:73 , HOH C:263 , HOH C:616
BINDING SITE FOR RESIDUE SO4 A 901
08
AC8
SOFTWARE
TYR A:95 , ASN A:109 , PRO B:1 , MET B:2 , TYR B:36 , ILE B:64 , PHE B:113 , HOH B:463 , HOH B:500
BINDING SITE FOR RESIDUE LE3 B 200
09
AC9
SOFTWARE
HOH A:221 , ASN B:102 , ASN B:105
BINDING SITE FOR RESIDUE CL B 701
10
BC1
SOFTWARE
GLY B:68 , ALA B:70 , GLN B:71
BINDING SITE FOR RESIDUE CL B 706
11
BC2
SOFTWARE
ASP B:100 , HOH B:262 , HOH B:453 , HOH B:504
BINDING SITE FOR RESIDUE NA B 803
12
BC3
SOFTWARE
TYR B:95 , PRO C:1 , MET C:2 , TYR C:36 , PHE C:113 , HOH C:376 , HOH C:612
BINDING SITE FOR RESIDUE LE3 C 200
13
BC4
SOFTWARE
HOH B:268 , ASN C:102 , ASN C:105
BINDING SITE FOR RESIDUE CL C 703
14
BC5
SOFTWARE
GLY C:68 , ALA C:70 , GLN C:71 , HOH C:613
BINDING SITE FOR RESIDUE CL C 705
15
BC6
SOFTWARE
ASP C:100 , HOH C:353 , HOH C:409 , HOH C:432
BINDING SITE FOR RESIDUE NA C 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: MIF (A:54-68,B:54-68,C:54-68)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MIF
PS01158
Macrophage migration inhibitory factor family signature.
MIF_HUMAN
55-69
3
A:54-68
B:54-68
C:54-68
[
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Exons
(3, 9)
Info
All Exons
Exon 1.1a (A:1-35 | B:1-35 | C:1-35)
Exon 1.2b (A:36-93 | B:36-93 | C:36-93)
Exon 1.2d (A:93-114 | B:93-114 | C:93-114)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.2d
4: Boundary 1.2d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000215754
1a
ENSE00001922200
chr22:
24236191-24236769
579
MIF_HUMAN
1-36
36
3
A:1-35
B:1-35
C:1-35
35
35
35
1.2b
ENST00000215754
2b
ENSE00000651496
chr22:
24236959-24237131
173
MIF_HUMAN
37-94
58
3
A:36-93
B:36-93
C:36-93
58
58
58
1.2d
ENST00000215754
2d
ENSE00001839840
chr22:
24237227-24237413
187
MIF_HUMAN
94-115
22
3
A:93-114
B:93-114
C:93-114
22
22
22
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3smca_ (A:)
1b: SCOP_d3smcb_ (B:)
1c: SCOP_d3smcc_ (C:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Tautomerase/MIF
(104)
Superfamily
:
Tautomerase/MIF
(104)
Family
:
MIF-related
(58)
Protein domain
:
Microphage migration inhibition factor (MIF)
(55)
Human (Homo sapiens) [TaxId: 9606]
(46)
1a
d3smca_
A:
1b
d3smcb_
B:
1c
d3smcc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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