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3SLS
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MEK-1 KINASE IN COMPLEX WITH UCB1353770 AND AMPPNP
Authors
:
C. Meier, T. A. Ceska
Date
:
25 Jun 11 (Deposition) - 29 Feb 12 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Serine-Threonine Kinase, Signalling, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Meier, D. C. Brookings, T. A. Ceska, C. Doyle, H. Gong, D. Mcmillan, G. P. Saville, A. Mushtaq, D. Knight, S. Reich, L. H. Pearl, K. A. Powell R. Savva, R. A. Allen
Engineering Human Mek-1 For Structural Studies: A Case Stud Of Combinatorial Domain Hunting.
J. Struct. Biol. V. 177 329 2012
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 6)
Info
All Hetero Components
1a: 2-[(2-FLUORO-4-IODOPHENYL)AMINO]-5... (77Da)
1b: 2-[(2-FLUORO-4-IODOPHENYL)AMINO]-5... (77Db)
2a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
77D
2
Ligand/Ion
2-[(2-FLUORO-4-IODOPHENYL)AMINO]-5,5-DIMETHYL-8-OXO-N-[(3R)-PIPERIDIN-3-YL]-5,6,7,8-TETRAHYDRO-4H-THIENO[2,3-C]AZEPINE-3-CARBOXAMIDE
2
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:6 , ALA A:76 , GLY A:77 , ASN A:78 , GLY A:80 , VAL A:82 , ALA A:95 , LYS A:97 , MET A:143 , GLU A:144 , MET A:146 , SER A:150 , GLN A:153 , ASP A:190 , LYS A:192 , SER A:194 , ASN A:195 , LEU A:197 , ASP A:208 , HOH A:358 , HOH A:384 , HOH A:386 , MG A:401 , HOH A:431 , HOH A:432 , HOH A:482 , HOH A:495 , 77D A:500
BINDING SITE FOR RESIDUE ANP A 400
2
AC2
SOFTWARE
LYS A:97 , ASN A:195 , ASP A:208 , ANP A:400 , HOH A:432
BINDING SITE FOR RESIDUE MG A 401
3
AC3
SOFTWARE
HOH A:6 , LYS A:97 , ILE A:99 , LEU A:115 , VAL A:127 , ILE A:141 , MET A:143 , CYS A:207 , ASP A:208 , PHE A:209 , VAL A:211 , SER A:212 , ANP A:400
BINDING SITE FOR RESIDUE 77D A 500
4
AC4
SOFTWARE
HOH B:18 , GLY B:75 , ALA B:76 , GLY B:77 , ASN B:78 , GLY B:80 , VAL B:82 , ALA B:95 , LYS B:97 , MET B:143 , GLU B:144 , MET B:146 , SER B:150 , GLN B:153 , ASP B:190 , LYS B:192 , SER B:194 , ASN B:195 , LEU B:197 , ASP B:208 , HOH B:357 , HOH B:382 , MG B:401 , HOH B:404 , HOH B:456 , HOH B:466 , HOH B:493 , HOH B:494 , 77D B:500
BINDING SITE FOR RESIDUE ANP B 400
5
AC5
SOFTWARE
ASN B:195 , ASP B:208 , ANP B:400 , HOH B:466
BINDING SITE FOR RESIDUE MG B 401
6
AC6
SOFTWARE
ASN B:78 , LYS B:97 , ILE B:99 , LEU B:115 , VAL B:127 , ILE B:141 , MET B:143 , CYS B:207 , ASP B:208 , PHE B:209 , GLY B:210 , VAL B:211 , SER B:212 , ANP B:400 , HOH B:433 , HOH B:450 , HOH B:456
BINDING SITE FOR RESIDUE 77D B 500
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035093 (F53S, chain A/B, )
2: VAR_069780 (G128V, chain A/B, )
3: VAR_035094 (Y130C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035093
F
53
S
MP2K1_HUMAN
Disease (CFC3)
---
A/B
F
53
S
2
UniProt
VAR_069780
G
128
V
MP2K1_HUMAN
Disease (CFC3)
---
A/B
G
128
V
3
UniProt
VAR_035094
Y
130
C
MP2K1_HUMAN
Disease (CFC3)
---
A/B
Y
130
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:74-97,B:74-97)
2: PROTEIN_KINASE_ST (A:186-198,B:186-198)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MP2K1_HUMAN
74-97
2
A:74-97
B:74-97
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MP2K1_HUMAN
186-198
2
A:186-198
B:186-198
[
close PROSITE info
]
Exons
(10, 20)
Info
All Exons
Exon 1.2a (A:42-97 | B:42-97)
Exon 1.3 (A:98-146 | B:98-146)
Exon 1.4 (A:147-172 | B:147-172)
Exon 1.5 (A:173-190 | B:173-190)
Exon 1.6 (A:190-231 (gaps) | B:190-231 (gaps...)
Exon 1.7b (A:232-264 | B:232-264)
Exon 1.8 (A:271-282 | B:269-282)
Exon 1.9 (A:283-303 | B:283-303)
Exon 1.10 (A:303-318 | B:303-318)
Exon 1.11 (A:319-345 | B:319-345)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2a
02: Boundary 1.2a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7b
07: Boundary 1.7b/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000307102
1
ENSE00001257104
chr15:
66679155-66679765
611
MP2K1_HUMAN
1-27
27
0
-
-
1.2a
ENST00000307102
2a
ENSE00001199409
chr15:
66727365-66727575
211
MP2K1_HUMAN
27-97
71
2
A:42-97
B:42-97
56
56
1.3
ENST00000307102
3
ENSE00001675310
chr15:
66729084-66729230
147
MP2K1_HUMAN
98-146
49
2
A:98-146
B:98-146
49
49
1.4
ENST00000307102
4
ENSE00001134060
chr15:
66735618-66735695
78
MP2K1_HUMAN
147-172
26
2
A:147-172
B:147-172
26
26
1.5
ENST00000307102
5
ENSE00001134055
chr15:
66736994-66737045
52
MP2K1_HUMAN
173-190
18
2
A:173-190
B:173-190
18
18
1.6
ENST00000307102
6
ENSE00001199390
chr15:
66774093-66774217
125
MP2K1_HUMAN
190-231
42
2
A:190-231 (gaps)
B:190-231 (gaps)
42
42
1.7b
ENST00000307102
7b
ENSE00001257056
chr15:
66777328-66777529
202
MP2K1_HUMAN
232-299
68
2
A:232-264
B:232-264
33
33
1.8
ENST00000307102
8
ENSE00001199379
chr15:
66779566-66779630
65
MP2K1_HUMAN
299-320
22
2
A:271-282
B:269-282
12
14
1.9
ENST00000307102
9
ENSE00001199374
chr15:
66781553-66781614
62
MP2K1_HUMAN
321-341
21
2
A:283-303
B:283-303
21
21
1.10
ENST00000307102
10
ENSE00001199370
chr15:
66782056-66782101
46
MP2K1_HUMAN
341-356
16
2
A:303-318
B:303-318
16
16
1.11
ENST00000307102
11
ENSE00001199414
chr15:
66782840-66783882
1043
MP2K1_HUMAN
357-393
37
2
A:319-345
B:319-345
27
27
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3slsa_ (A:)
1b: SCOP_d3slsb_ (B:)
View:
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Label:
Classes
(
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(
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(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3slsa_
A:
1b
d3slsb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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