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3SLN
Biol. Unit 1
Info
Asym.Unit (1018 KB)
Biol.Unit 1 (207 KB)
Biol.Unit 2 (203 KB)
Biol.Unit 3 (107 KB)
Biol.Unit 4 (204 KB)
Biol.Unit 5 (208 KB)
Biol.Unit 6 (193 KB)
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(1)
Title
:
STRUCTURAL CHARACTERIZATION OF A GII.4 2004 NOROVIRUS VARIANT (TCH05) BOUND TO H PENTASACCHARIDE
Authors
:
S. Shanker, J-M. Choi, B. Sankaran, R. L. Atmar, Estes M. K. , Prasad B.
Date
:
24 Jun 11 (Deposition) - 13 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.84
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,J (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: E,H (1x)
Biol. Unit 5: F,G (1x)
Biol. Unit 6: I (2x)
Keywords
:
Viral Protein, Hbga
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Shanker, J. M. Choi, B. Sankaran, R. L. Atmar, M. K. Estes, B. V. Prasa
Structural Analysis Of Histo-Blood Group Antigen Binding Specificity In A Norovirus Gii. 4 Epidemic Variant: Implications For Epochal Evolution.
J. Virol. V. 85 8635 2011
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
2g: ALPHA-L-FUCOSE (FUCg)
2h: ALPHA-L-FUCOSE (FUCh)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
3d: BETA-D-GALACTOSE (GALd)
3e: BETA-D-GALACTOSE (GALe)
3f: BETA-D-GALACTOSE (GALf)
3g: BETA-D-GALACTOSE (GALg)
3h: BETA-D-GALACTOSE (GALh)
3i: BETA-D-GALACTOSE (GALi)
3j: BETA-D-GALACTOSE (GALj)
3k: BETA-D-GALACTOSE (GALk)
3l: BETA-D-GALACTOSE (GALl)
3m: BETA-D-GALACTOSE (GALm)
3n: BETA-D-GALACTOSE (GALn)
3o: BETA-D-GALACTOSE (GALo)
3p: BETA-D-GALACTOSE (GALp)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC1 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: DC4 (SOFTWARE)
15: DC5 (SOFTWARE)
16: DC6 (SOFTWARE)
17: DC7 (SOFTWARE)
18: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:444 , GAL C:2 , GAL C:4
BINDING SITE FOR RESIDUE NAG C 3
02
AC2
SOFTWARE
SER A:442 , FUC C:1 , NAG C:3
BINDING SITE FOR RESIDUE GAL C 2
03
AC3
SOFTWARE
GLY A:443 , GAL C:2 , SER C:343 , THR C:344 , ARG C:345 , ASP C:374
BINDING SITE FOR RESIDUE FUC C 1
04
AC6
SOFTWARE
GAL D:2 , GAL D:4 , GLY F:392 , SER F:393
BINDING SITE FOR RESIDUE NAG D 3
05
AC7
SOFTWARE
FUC D:1 , NAG D:3 , SER F:442
BINDING SITE FOR RESIDUE GAL D 2
06
AC8
SOFTWARE
GAL D:2 , SER D:343 , THR D:344 , ARG D:345 , ASP D:374 , GLY F:443 , TYR F:444
BINDING SITE FOR RESIDUE FUC D 1
07
AC9
SOFTWARE
NAG D:3 , BGC D:5
BINDING SITE FOR RESIDUE GAL D 4
08
BC1
SOFTWARE
GAL D:4
BINDING SITE FOR RESIDUE BGC D 5
09
CC3
SOFTWARE
GLY D:392 , SER D:393 , GAL D:533 , GAL D:535
BINDING SITE FOR RESIDUE NAG D 532
10
CC4
SOFTWARE
SER D:442 , NAG D:532 , FUC D:534
BINDING SITE FOR RESIDUE GAL D 533
11
CC5
SOFTWARE
SER D:442 , GLY D:443 , GAL D:533 , THR F:344 , ARG F:345 , ASP F:374
BINDING SITE FOR RESIDUE FUC D 534
12
CC6
SOFTWARE
NAG D:532 , BGC D:536
BINDING SITE FOR RESIDUE GAL D 535
13
CC7
SOFTWARE
GAL D:535
BINDING SITE FOR RESIDUE BGC D 536
14
DC4
SOFTWARE
GAL A:2 , GAL A:4 , GLY C:392 , SER C:393 , TYR C:444
BINDING SITE FOR RESIDUE NAG A 3
15
DC5
SOFTWARE
FUC A:1 , NAG A:3 , SER C:442
BINDING SITE FOR RESIDUE GAL A 2
16
DC6
SOFTWARE
GAL A:2 , SER A:343 , THR A:344 , ARG A:345 , ASP A:374 , SER C:442 , GLY C:443 , TYR C:444
BINDING SITE FOR RESIDUE FUC A 1
17
DC7
SOFTWARE
NAG A:3 , BGC A:5
BINDING SITE FOR RESIDUE GAL A 4
18
DC8
SOFTWARE
GAL A:4
BINDING SITE FOR RESIDUE BGC A 5
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Protein & NOT Site
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (1018 KB)
Header - Asym.Unit
Biol.Unit 1 (207 KB)
Header - Biol.Unit 1
Biol.Unit 2 (203 KB)
Header - Biol.Unit 2
Biol.Unit 3 (107 KB)
Header - Biol.Unit 3
Biol.Unit 4 (204 KB)
Header - Biol.Unit 4
Biol.Unit 5 (208 KB)
Header - Biol.Unit 5
Biol.Unit 6 (193 KB)
Header - Biol.Unit 6
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