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3SLH
Asym. Unit
Info
Asym.Unit (630 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (160 KB)
Biol.Unit 3 (159 KB)
Biol.Unit 4 (158 KB)
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Title
:
1.70 ANGSTROM RESOLUTION STRUCTURE OF 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE (AROA) FROM COXIELLA BURNETII IN COMPLEX WITH SHIKIMATE-3-PHOSPHATE AND GLYPHOSATE
Authors
:
S. H. Light, G. Minasov, E. V. Filippova, S. N. Krishna, L. Shuvalova, L. W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
24 Jun 11 (Deposition) - 20 Jul 11 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, 3-Phosphoshikimate 1-Carboxyvinyltransferase Activity, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. H. Light, G. Minasov, E. V. Filippova, S. N. Krishna, L. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 70 Angstrom Resolution Structure Of 3-Phosphoshikimate 1-Carboxyvinyltransferase(Aroa) From Coxiella Burnetii In Complex With Shikimate-3-Phosphate And Glyphosate
To Be Published
[
close entry info
]
Hetero Components
(11, 47)
Info
All Hetero Components
01a: PENTAETHYLENE GLYCOL (1PEa)
02a: BETA-MERCAPTOETHANOL (BMEa)
02b: BETA-MERCAPTOETHANOL (BMEb)
02c: BETA-MERCAPTOETHANOL (BMEc)
02d: BETA-MERCAPTOETHANOL (BMEd)
02e: BETA-MERCAPTOETHANOL (BMEe)
03a: CHLORIDE ION (CLa)
03b: CHLORIDE ION (CLb)
04a: 1,2-ETHANEDIOL (EDOa)
04b: 1,2-ETHANEDIOL (EDOb)
04c: 1,2-ETHANEDIOL (EDOc)
04d: 1,2-ETHANEDIOL (EDOd)
05a: GLYPHOSATE (GPJa)
05b: GLYPHOSATE (GPJb)
05c: GLYPHOSATE (GPJc)
05d: GLYPHOSATE (GPJd)
05e: GLYPHOSATE (GPJe)
06a: DI(HYDROXYETHYL)ETHER (PEGa)
06b: DI(HYDROXYETHYL)ETHER (PEGb)
06c: DI(HYDROXYETHYL)ETHER (PEGc)
06d: DI(HYDROXYETHYL)ETHER (PEGd)
06e: DI(HYDROXYETHYL)ETHER (PEGe)
06f: DI(HYDROXYETHYL)ETHER (PEGf)
06g: DI(HYDROXYETHYL)ETHER (PEGg)
06h: DI(HYDROXYETHYL)ETHER (PEGh)
06i: DI(HYDROXYETHYL)ETHER (PEGi)
06j: DI(HYDROXYETHYL)ETHER (PEGj)
06k: DI(HYDROXYETHYL)ETHER (PEGk)
06l: DI(HYDROXYETHYL)ETHER (PEGl)
06m: DI(HYDROXYETHYL)ETHER (PEGm)
06n: DI(HYDROXYETHYL)ETHER (PEGn)
07a: TETRAETHYLENE GLYCOL (PG4a)
07b: TETRAETHYLENE GLYCOL (PG4b)
07c: TETRAETHYLENE GLYCOL (PG4c)
08a: TRIETHYLENE GLYCOL (PGEa)
09a: PHOSPHATE ION (PO4a)
09b: PHOSPHATE ION (PO4b)
09c: PHOSPHATE ION (PO4c)
09d: PHOSPHATE ION (PO4d)
10a: SHIKIMATE-3-PHOSPHATE (S3Pa)
10b: SHIKIMATE-3-PHOSPHATE (S3Pb)
10c: SHIKIMATE-3-PHOSPHATE (S3Pc)
10d: SHIKIMATE-3-PHOSPHATE (S3Pd)
11a: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHE... (SKMa)
11b: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHE... (SKMb)
11c: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHE... (SKMc)
11d: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHE... (SKMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
BME
5
Ligand/Ion
BETA-MERCAPTOETHANOL
3
CL
2
Ligand/Ion
CHLORIDE ION
4
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
5
GPJ
5
Ligand/Ion
GLYPHOSATE
6
PEG
14
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
8
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
9
PO4
4
Ligand/Ion
PHOSPHATE ION
10
S3P
4
Ligand/Ion
SHIKIMATE-3-PHOSPHATE
11
SKM
4
Ligand/Ion
(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLICACID
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:253 , CYS A:255 , ASP A:292
BINDING SITE FOR RESIDUE BME A 439
02
AC2
SOFTWARE
GLU A:14 , CYS A:16
BINDING SITE FOR RESIDUE BME A 440
03
AC3
SOFTWARE
ARG A:127 , SER A:167 , ALA A:168 , GLN A:169 , GLU A:338 , LYS A:342 , SKM A:445 , HOH A:493 , HOH A:511 , HOH A:544 , HOH A:575 , HOH A:1219
BINDING SITE FOR RESIDUE PO4 A 441
04
AC4
SOFTWARE
ASP A:117 , SER A:118 , HIS A:281 , HOH A:607 , HOH A:912 , HOH A:1490
BINDING SITE FOR RESIDUE PO4 A 442
05
AC5
SOFTWARE
LYS A:21 , SER A:22 , ARG A:26 , THR A:96 , SER A:167 , ALA A:168 , GLN A:169 , ARG A:194 , ASP A:315 , LYS A:342 , GPJ A:444 , HOH A:493 , HOH A:511 , HOH A:544 , HOH A:575 , HOH A:1219
BINDING SITE FOR RESIDUE S3P A 443
06
AC6
SOFTWARE
LYS A:21 , ASN A:93 , GLY A:95 , THR A:96 , ARG A:99 , ARG A:123 , GLN A:169 , ASP A:315 , GLU A:343 , ARG A:346 , HIS A:386 , ARG A:387 , S3P A:443 , SKM A:445 , HOH A:485 , HOH A:575 , HOH A:593
BINDING SITE FOR RESIDUE GPJ A 444
07
AC7
SOFTWARE
LYS A:21 , SER A:22 , ARG A:26 , THR A:96 , ALA A:168 , GLN A:169 , ARG A:194 , ASP A:315 , LYS A:342 , PO4 A:441 , GPJ A:444
BINDING SITE FOR RESIDUE SKM A 445
08
AC8
SOFTWARE
LYS A:301 , GLY A:302 , GLY A:329 , LYS A:330
BINDING SITE FOR RESIDUE EDO A 446
09
AC9
SOFTWARE
TYR A:180 , GLY A:220 , HOH A:507 , HOH A:1387
BINDING SITE FOR RESIDUE PEG A 447
10
BC1
SOFTWARE
MET A:1 , GLY A:431
BINDING SITE FOR RESIDUE PEG A 448
11
BC2
SOFTWARE
ALA A:360 , GLU A:362
BINDING SITE FOR RESIDUE EDO A 449
12
BC3
SOFTWARE
MET A:273 , ARG A:299
BINDING SITE FOR RESIDUE PEG A 450
13
BC4
SOFTWARE
THR A:142 , PRO A:147 , GLU A:284
BINDING SITE FOR RESIDUE PEG A 451
14
BC5
SOFTWARE
THR A:344 , ALA A:348 , TYR A:383 , HOH A:813
BINDING SITE FOR RESIDUE PEG A 452
15
BC6
SOFTWARE
GLY A:36 , GLN A:37 , ALA A:225 , ASN A:226 , ASP A:227 , HOH A:1507
BINDING SITE FOR RESIDUE PEG A 453
16
BC7
SOFTWARE
GLU B:14 , ARG B:253 , CYS B:255 , ASP B:292 , HOH B:984 , ARG C:155 , ARG C:182
BINDING SITE FOR RESIDUE BME B 439
17
BC8
SOFTWARE
ARG B:127 , SER B:167 , ALA B:168 , GLN B:169 , GLU B:338 , LYS B:342 , SKM B:443 , HOH B:483 , HOH B:527 , HOH B:529 , HOH B:565 , HOH B:596
BINDING SITE FOR RESIDUE PO4 B 440
18
BC9
SOFTWARE
LYS B:21 , SER B:22 , ARG B:26 , THR B:96 , SER B:167 , ALA B:168 , GLN B:169 , ARG B:194 , ASP B:315 , LYS B:342 , GPJ B:442 , HOH B:483 , HOH B:527 , HOH B:529 , HOH B:565 , HOH B:596
BINDING SITE FOR RESIDUE S3P B 441
19
CC1
SOFTWARE
LYS B:21 , ASN B:93 , GLY B:95 , THR B:96 , ARG B:123 , GLN B:169 , ASP B:315 , GLU B:343 , ARG B:346 , HIS B:386 , ARG B:387 , S3P B:441 , SKM B:443 , HOH B:480 , HOH B:579 , HOH B:596
BINDING SITE FOR RESIDUE GPJ B 442
20
CC2
SOFTWARE
LYS B:21 , SER B:22 , ARG B:26 , THR B:96 , ALA B:168 , GLN B:169 , ARG B:194 , ASP B:315 , LYS B:342 , PO4 B:440 , GPJ B:442
BINDING SITE FOR RESIDUE SKM B 443
21
CC3
SOFTWARE
ARG A:435 , GLY B:36 , GLN B:37 , ASN B:226 , ASP B:227
BINDING SITE FOR RESIDUE GPJ B 444
22
CC4
SOFTWARE
MET B:1 , GLY B:431 , ARG B:433
BINDING SITE FOR RESIDUE PEG B 445
23
CC5
SOFTWARE
LYS B:210 , ASP B:211 , GLN B:213 , SER B:214 , ILE B:215
BINDING SITE FOR RESIDUE PEG B 446
24
CC6
SOFTWARE
ARG B:340 , PRO B:365
BINDING SITE FOR RESIDUE PGE B 447
25
CC7
SOFTWARE
ALA B:348 , TYR B:383 , HOH B:1249
BINDING SITE FOR RESIDUE PEG B 448
26
CC8
SOFTWARE
GLU B:198 , LYS B:202 , LEU B:208 , ILE B:215 , GLU B:287
BINDING SITE FOR RESIDUE 1PE B 449
27
CC9
SOFTWARE
GLU C:14 , ARG C:253 , CYS C:255 , ASP C:292
BINDING SITE FOR RESIDUE BME C 439
28
DC1
SOFTWARE
PRO C:124 , ARG C:127 , HOH C:991
BINDING SITE FOR RESIDUE CL C 440
29
DC2
SOFTWARE
ARG C:127 , SER C:167 , ALA C:168 , GLN C:169 , GLU C:338 , LYS C:342 , SKM C:443 , HOH C:502 , HOH C:585 , HOH C:622 , HOH C:1220 , HOH C:1262
BINDING SITE FOR RESIDUE PO4 C 441
30
DC3
SOFTWARE
LYS C:21 , ASN C:93 , GLY C:95 , THR C:96 , ARG C:123 , GLN C:169 , ASP C:315 , GLU C:343 , ARG C:346 , HIS C:386 , ARG C:387 , SKM C:443 , S3P C:444 , HOH C:548 , HOH C:622 , HOH C:638
BINDING SITE FOR RESIDUE GPJ C 442
31
DC4
SOFTWARE
LYS C:21 , SER C:22 , ARG C:26 , THR C:96 , ALA C:168 , GLN C:169 , ARG C:194 , ASP C:315 , LYS C:342 , PO4 C:441 , GPJ C:442 , HOH C:622
BINDING SITE FOR RESIDUE SKM C 443
32
DC5
SOFTWARE
LYS C:21 , SER C:22 , ARG C:26 , THR C:96 , SER C:167 , ALA C:168 , GLN C:169 , ARG C:194 , ASP C:315 , LYS C:342 , GPJ C:442 , HOH C:502 , HOH C:585 , HOH C:622 , HOH C:1220 , HOH C:1262
BINDING SITE FOR RESIDUE S3P C 444
33
DC6
SOFTWARE
THR C:344 , ALA C:348 , TYR C:383 , HOH C:1561 , HOH C:1562
BINDING SITE FOR RESIDUE PEG C 445
34
DC7
SOFTWARE
PRO C:7 , SER C:8 , GLN C:9 , ASN C:428 , HOH C:534
BINDING SITE FOR RESIDUE PG4 C 446
35
DC8
SOFTWARE
GLN C:4 , ILE C:6 , ASN C:423 , VAL C:429 , LYS C:430
BINDING SITE FOR RESIDUE PEG C 447
36
DC9
SOFTWARE
ILE C:6 , PRO C:7 , LYS C:400
BINDING SITE FOR RESIDUE EDO C 448
37
EC1
SOFTWARE
ARG C:253 , ARG C:296 , HOH C:939
BINDING SITE FOR RESIDUE EDO C 449
38
EC2
SOFTWARE
LYS C:202 , LEU C:208 , LYS C:210
BINDING SITE FOR RESIDUE PG4 C 450
39
EC3
SOFTWARE
GLU D:14 , ARG D:253 , CYS D:255 , ASP D:292
BINDING SITE FOR RESIDUE BME D 439
40
EC4
SOFTWARE
PRO D:124 , ARG D:127 , HOH D:1418
BINDING SITE FOR RESIDUE CL D 440
41
EC5
SOFTWARE
LYS D:21 , ASN D:93 , GLY D:95 , THR D:96 , ARG D:123 , GLN D:169 , ASP D:315 , GLU D:343 , ARG D:346 , HIS D:386 , ARG D:387 , S3P D:442 , SKM D:443 , HOH D:516 , HOH D:625 , HOH D:963
BINDING SITE FOR RESIDUE GPJ D 441
42
EC6
SOFTWARE
LYS D:21 , SER D:22 , ARG D:26 , SER D:167 , ALA D:168 , GLN D:169 , ARG D:194 , ASP D:315 , LYS D:342 , GPJ D:441 , HOH D:488 , HOH D:554 , HOH D:963 , HOH D:1217 , HOH D:1218
BINDING SITE FOR RESIDUE S3P D 442
43
EC7
SOFTWARE
LYS D:21 , SER D:22 , ARG D:26 , THR D:96 , ALA D:168 , GLN D:169 , ARG D:194 , ASP D:315 , LYS D:342 , GPJ D:441
BINDING SITE FOR RESIDUE SKM D 443
44
EC8
SOFTWARE
GLY A:143 , ASN A:144 , HOH A:1320 , SER D:8 , GLN D:9 , ASN D:428 , HOH D:476
BINDING SITE FOR RESIDUE PEG D 444
45
EC9
SOFTWARE
ASP D:140 , SER D:141 , THR D:142 , PRO D:147
BINDING SITE FOR RESIDUE PEG D 445
46
FC1
SOFTWARE
ALA D:348 , TYR D:383
BINDING SITE FOR RESIDUE PEG D 446
47
FC2
SOFTWARE
ARG D:199 , LYS D:202 , LEU D:208 , LYS D:210
BINDING SITE FOR RESIDUE PG4 D 447
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EPSP_SYNTHASE_1 (A:89-103,B:89-103,C:89-103,D:89-10...)
2: EPSP_SYNTHASE_2 (A:340-358,B:340-358,C:340-358,D:34...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPSP_SYNTHASE_1
PS00104
EPSP synthase signature 1.
AROA_COXBU
89-103
4
A:89-103
B:89-103
C:89-103
D:89-103
2
EPSP_SYNTHASE_2
PS00885
EPSP synthase signature 2.
AROA_COXBU
340-358
4
A:340-358
B:340-358
C:340-358
D:340-358
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3slha_ (A:)
1b: SCOP_d3slhb_ (B:)
1c: SCOP_d3slhc_ (C:)
1d: SCOP_d3slhd_ (D:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Coxiella burnetii [TaxId: 227377]
(3)
1a
d3slha_
A:
1b
d3slhb_
B:
1c
d3slhc_
C:
1d
d3slhd_
D:
[
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CATH Domains
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Pfam Domains
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