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3SL9
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (33 KB)
Biol.Unit 4 (29 KB)
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(1)
Title
:
X-RAY STRUCTURE OF BETA CATENIN IN COMPLEX WITH BCL9
Authors
:
D. Gupta, M. Bienz
Date
:
24 Jun 11 (Deposition) - 29 Feb 12 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Armadillo Repeat, Components Of The Wnt Signaling Pathway, Beta Catenin, Signaling Protein, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. De La Roche, T. J. Rutherford, D. Gupta, D. B. Veprintsev, B. Saxty S. M. Freund, M. Bienz
An Intrinsically Labile Alpha-Helix Abutting The Bcl9-Binding Site Of Beta-Catenin Is Required For Its Inhibition By Carnosic Acid.
Nat Commun V. 3 680 2012
[
close entry info
]
Hetero Components
(4, 28)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: IMIDAZOLE (IMDa)
3b: IMIDAZOLE (IMDb)
3c: IMIDAZOLE (IMDc)
3d: IMIDAZOLE (IMDd)
3e: IMIDAZOLE (IMDe)
3f: IMIDAZOLE (IMDf)
3g: IMIDAZOLE (IMDg)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
5
Ligand/Ion
GLYCEROL
3
IMD
7
Ligand/Ion
IMIDAZOLE
4
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:299 , GLN A:302
BINDING SITE FOR RESIDUE EDO A 1
02
AC2
SOFTWARE
GLU A:163 , GLN A:165
BINDING SITE FOR RESIDUE EDO A 2
03
AC3
SOFTWARE
ASP A:249 , LYS A:288 , THR A:289 , ASN A:290 , PHE A:293 , LYS E:288
BINDING SITE FOR RESIDUE PEG A 306
04
AC4
SOFTWARE
THR A:205 , SER A:246
BINDING SITE FOR RESIDUE IMD A 307
05
AC5
SOFTWARE
LEU C:351 , GLN C:353 , MET E:243 , SER E:246
BINDING SITE FOR RESIDUE EDO C 3
06
AC6
SOFTWARE
HOH A:87 , ARG A:274 , GLN B:280
BINDING SITE FOR RESIDUE EDO A 5
07
AC7
SOFTWARE
HOH C:49 , HOH C:51 , GLU C:357 , ALA E:276 , GLY E:277
BINDING SITE FOR RESIDUE PEG C 2
08
AC8
SOFTWARE
ASP B:299
BINDING SITE FOR RESIDUE GOL B 308
09
AC9
SOFTWARE
SER B:222 , HIS B:223 , HIS B:265
BINDING SITE FOR RESIDUE GOL B 309
10
BC1
SOFTWARE
HIS B:176 , LYS B:180 , ASN B:220 , TYR B:254
BINDING SITE FOR RESIDUE EDO B 4
11
BC2
SOFTWARE
PHE B:253 , LYS B:292
BINDING SITE FOR RESIDUE EDO B 7
12
BC3
SOFTWARE
HOH B:89 , LEU B:263
BINDING SITE FOR RESIDUE EDO B 6
13
BC4
SOFTWARE
MET A:271 , HOH B:78 , LYS B:281 , LEU B:285
BINDING SITE FOR RESIDUE PEG B 3
14
BC5
SOFTWARE
HOH B:58 , THR B:205 , ASN B:206 , LYS B:242
BINDING SITE FOR RESIDUE PEG B 306
15
BC6
SOFTWARE
PRO A:238 , GLN B:203
BINDING SITE FOR RESIDUE IMD B 307
16
BC7
SOFTWARE
HOH E:93 , GLY E:235 , PRO E:238 , ALA E:272 , GOL F:4
BINDING SITE FOR RESIDUE EDO E 8
17
BC8
SOFTWARE
ASP E:299
BINDING SITE FOR RESIDUE GOL E 2
18
BC9
SOFTWARE
GLU C:360 , GLY E:245
BINDING SITE FOR RESIDUE EDO E 9
19
CC1
SOFTWARE
LYS E:292
BINDING SITE FOR RESIDUE EDO E 10
20
CC2
SOFTWARE
PHE E:232 , GLU E:267 , GLY E:268 , GLN F:364 , ASP F:368 , ARG F:371
BINDING SITE FOR RESIDUE EDO E 11
21
CC3
SOFTWARE
HOH E:125 , ARG E:151 , ARG E:274 , GLN E:280 , ALA G:305
BINDING SITE FOR RESIDUE PEG E 5
22
CC4
SOFTWARE
LYS E:158
BINDING SITE FOR RESIDUE IMD E 4
23
CC5
SOFTWARE
EDO E:8 , ALA E:272 , ALA E:276 , MET F:372
BINDING SITE FOR RESIDUE GOL F 4
24
CC6
SOFTWARE
HIS A:260 , HOH G:316
BINDING SITE FOR RESIDUE GOL G 1
25
CC7
SOFTWARE
HOH A:17 , HIS G:260
BINDING SITE FOR RESIDUE IMD G 5
26
CC8
SOFTWARE
ASP G:299 , GLN G:302
BINDING SITE FOR RESIDUE IMD G 7
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:193-236,B:193-236,E:193-236,G:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
CTNB1_HUMAN
193-236
151-191
235-277
277-319
319-362
400-442
442-484
489-532
594-636
16
A:193-236
B:193-236
E:193-236
G:193-236
A:151-191
B:151-191
E:151-191
G:151-191
A:235-277
B:235-277
E:235-277
G:235-277
A:277-305
B:277-305
E:277-305
G:277-305
-
-
-
-
-
[
close PROSITE info
]
Exons
(4, 16)
Info
All Exons
Exon 1.9 (C:348-374 | D:352-374 | F:349-375 ...)
Exon 2.10d (A:142-165 | B:141-165 | E:141-165 ...)
Exon 2.11b (A:166-245 | B:166-245 | E:166-245 ...)
Exon 2.12 (A:245-305 | B:245-305 | E:245-305 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 2.9e/2.10d
4: Boundary 2.10d/2.11b
5: Boundary 2.11b/2.12
6: Boundary 2.12/2.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000234739
1
ENSE00001344656
chr1:
147013182-147013444
263
BCL9_HUMAN
-
0
0
-
-
1.3
ENST00000234739
3
ENSE00001344647
chr1:
147076570-147076704
135
BCL9_HUMAN
-
0
0
-
-
1.4
ENST00000234739
4
ENSE00001344643
chr1:
147078577-147078659
83
BCL9_HUMAN
-
0
0
-
-
1.5b
ENST00000234739
5b
ENSE00001156130
chr1:
147083377-147083688
312
BCL9_HUMAN
1-18
18
0
-
-
1.6b
ENST00000234739
6b
ENSE00000824226
chr1:
147084682-147084998
317
BCL9_HUMAN
18-124
107
0
-
-
1.7
ENST00000234739
7
ENSE00000787540
chr1:
147086226-147086415
190
BCL9_HUMAN
124-187
64
0
-
-
1.8
ENST00000234739
8
ENSE00000787541
chr1:
147087603-147087702
100
BCL9_HUMAN
187-220
34
0
-
-
1.9
ENST00000234739
9
ENSE00000787543
chr1:
147090622-147092863
2242
BCL9_HUMAN
221-968
748
4
C:348-374
D:352-374
F:349-375
H:352-371
27
23
27
20
1.10
ENST00000234739
10
ENSE00000903093
chr1:
147094072-147094332
261
BCL9_HUMAN
968-1055
88
0
-
-
1.11
ENST00000234739
11
ENSE00001156122
chr1:
147095643-147098017
2375
BCL9_HUMAN
1055-1426
372
0
-
-
2.4e
ENST00000396185
4e
ENSE00001933873
chr3:
41240996-41241161
166
CTNB1_HUMAN
-
0
0
-
-
2.7
ENST00000396185
7
ENSE00002142861
chr3:
41265512-41265572
61
CTNB1_HUMAN
1-5
5
0
-
-
2.9e
ENST00000396185
9e
ENSE00001697426
chr3:
41266017-41266244
228
CTNB1_HUMAN
5-81
77
0
-
-
2.10d
ENST00000396185
10d
ENSE00001748344
chr3:
41266445-41266698
254
CTNB1_HUMAN
81-165
85
4
A:142-165
B:141-165
E:141-165
G:148-165
24
25
25
18
2.11b
ENST00000396185
11b
ENSE00001692569
chr3:
41266825-41267063
239
CTNB1_HUMAN
166-245
80
4
A:166-245
B:166-245
E:166-245
G:166-245
80
80
80
80
2.12
ENST00000396185
12
ENSE00001643204
chr3:
41267151-41267352
202
CTNB1_HUMAN
245-312
68
4
A:245-305
B:245-305
E:245-305
G:245-305
61
61
61
61
2.13
ENST00000396185
13
ENSE00001767208
chr3:
41268699-41268843
145
CTNB1_HUMAN
313-361
49
0
-
-
2.14
ENST00000396185
14
ENSE00001649367
chr3:
41274832-41274935
104
CTNB1_HUMAN
361-395
35
0
-
-
2.15
ENST00000396185
15
ENSE00001718373
chr3:
41275020-41275358
339
CTNB1_HUMAN
396-508
113
0
-
-
2.16a
ENST00000396185
16a
ENSE00001592339
chr3:
41275630-41275788
159
CTNB1_HUMAN
509-561
53
0
-
-
2.17b
ENST00000396185
17b
ENSE00001707050
chr3:
41277215-41277334
120
CTNB1_HUMAN
562-601
40
0
-
-
2.18a
ENST00000396185
18a
ENSE00002175036
chr3:
41277840-41277990
151
CTNB1_HUMAN
602-652
51
0
-
-
2.18d
ENST00000396185
18d
ENSE00001782706
chr3:
41278079-41278200
122
CTNB1_HUMAN
652-692
41
0
-
-
2.19
ENST00000396185
19
ENSE00001805633
chr3:
41279507-41279567
61
CTNB1_HUMAN
693-713
21
0
-
-
2.20c
ENST00000396185
20c
ENSE00001524181
chr3:
41280625-41280845
221
CTNB1_HUMAN
713-781
69
0
-
-
2.20g
ENST00000396185
20g
ENSE00001524178
chr3:
41281151-41281934
784
CTNB1_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asym.Unit (127 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
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Biol.Unit 3 (33 KB)
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