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3SKA
Asym. Unit
Info
Asym.Unit (204 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
I. NOVEL HCV NS5B POLYMERASE INHIBITORS: DISCOVERY OF INDOLE 2-CARBOXYLIC ACIDS WITH C3-HETEROCYCLES
Authors
:
C. A. Lesburg, G. N. Anilkumar
Date
:
22 Jun 11 (Deposition) - 31 Aug 11 (Release) - 26 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Rna-Dependent Rna Polymerase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. N. Anilkumar, C. A. Lesburg, O. Selyutin, S. B. Rosenblum, Q. Zeng, Y. Jiang, T. Y. Chan, H. Pu, H. Vaccaro, L. Wang, F. Bennett, K. X. Chen, J. Duca, S. Gavalas, Y. Huang, P. Pinto, M. Sannigrahi, F. Velazquez, S. Venkatraman, B. Vibulbhan, S. Agrawal, N. Butkiewicz, B. Feld, E. Ferrari, Z. He, C. K. Jiang, R. E. Palermo, P. Mcmonagle, H. C. Huang, N. Y. Shih, G. Njoroge, J. A. Kozlowski
I. Novel Hcv Ns5B Polymerase Inhibitors: Discovery Of Indol 2-Carboxylic Acids With C3-Heterocycles.
Bioorg. Med. Chem. Lett. V. 21 5336 2011
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 1-[(2-AMINOPYRIDIN-4-YL)METHYL]-3-... (053a)
1b: 1-[(2-AMINOPYRIDIN-4-YL)METHYL]-3-... (053b)
2a: PHOSPHATE ION (PO4a)
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Label:
No.
Name
Count
Type
Full Name
1
053
2
Ligand/Ion
1-[(2-AMINOPYRIDIN-4-YL)METHYL]-3-(2-OXO-1,2-DIHYDROPYRIDIN-3-YL)-5-(TRIFLUOROMETHYL)-1H-INDOLE-2-CARBOXYLIC ACID
2
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:265 , ARG A:505 , VAL A:530 , ARG A:531 , THR A:532 , HOH A:662 , HOH A:772 , HOH A:980 , HOH A:1058
BINDING SITE FOR RESIDUE PO4 A 577
2
AC2
SOFTWARE
PRO A:197 , ASN A:316 , CYS A:366 , SER A:367 , SER A:368 , LEU A:384 , GLY A:410 , ASN A:411 , MET A:414 , TYR A:415 , GLN A:446 , ILE A:447 , TYR A:448 , HOH A:825 , HOH A:1072 , HOH A:4014 , HOH A:4025
BINDING SITE FOR RESIDUE 053 A 578
3
AC3
SOFTWARE
PRO B:197 , ASN B:316 , CYS B:366 , SER B:368 , LEU B:384 , GLY B:410 , ASN B:411 , MET B:414 , TYR B:415 , GLN B:446 , ILE B:447 , TYR B:448 , HOH B:691 , HOH B:832
BINDING SITE FOR RESIDUE 053 B 577
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POLG_HCVJ4_028 (C366R, chain A/B, )
2: VAR_POLG_HCVJ4_029 (I405V, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_HCVJ4_028
*
C
2785
R
POLG_HCVJ4
---
---
A/B
C
366
R
2
UniProt
VAR_POLG_HCVJ4_029
*
I
2824
V
POLG_HCVJ4
---
---
A/B
I
405
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RDRP_SSRNA_POS (A:214-332,B:214-332)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_HCVJ4
2633-2751
2
A:214-332
B:214-332
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3skaa_ (A:)
2a: SCOP_d3skab_ (B:)
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Protein Domains
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Organisms
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Hepatitis C virus [TaxId: 420174]
(4)
1a
d3skaa_
A:
Protein domain
:
Viral RNA polymerase
(148)
Hepatitis C virus [TaxId: 11103]
(72)
2a
d3skab_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (204 KB)
Header - Asym.Unit
Biol.Unit 1 (104 KB)
Header - Biol.Unit 1
Biol.Unit 2 (100 KB)
Header - Biol.Unit 2
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