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Getting 'Biological Unit' information from database.
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3SJG
Biol. Unit 1
Info
Asym.Unit (264 KB)
Biol.Unit 1 (508 KB)
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(1)
Title
:
HUMAN GLUTAMATE CARBOXYPEPTIDASE II (E424A INACTIVE MUTANT ) IN COMPLEX WITH N-ACETYL-ASPARTYL-AMINOOCTANOIC ACID
Authors
:
A. Plechanovova, Y. Byun, G. Alquicer, L. Skultetyova, P. Mlcochova, A H. Kim, M. Navratil, R. Mease, J. Lubkowski, M. Pomper, J. Konvalinka, L. Rulisek, C. Barinka
Date
:
21 Jun 11 (Deposition) - 05 Oct 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Metallopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Plechanovova, Y. Byun, G. Alquicer, L. Skultetyova, P. Mlcochova, A. Nemcova, H. J. Kim, M. Navratil, R. Mease, J. Lubkowski, M. Pomper, J. Konvalinka, L. Rulisek, C. Barinka
Novel Substrate-Based Inhibitors Of Human Glutamate Carboxypeptidase Ii With Enhanced Lipophilicity.
J. Med. Chem. V. 54 7535 2011
[
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
4a: ALPHA-D-MANNOSE (MANa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6a: (2S)-2-[(N-ACETYL-L-ALPHA-ASPARTYL... (SDRa)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SDR
2
Ligand/Ion
(2S)-2-[(N-ACETYL-L-ALPHA-ASPARTYL)AMINO]NONANOIC ACID
7
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SDR A:1 , ASP A:387 , GLU A:425 , HIS A:553 , ZN A:1752 , HOH A:2271
BINDING SITE FOR RESIDUE ZN A 1751
02
AC2
SOFTWARE
SDR A:1 , HIS A:377 , ASP A:387 , GLU A:425 , ASP A:453 , ZN A:1751 , HOH A:2271
BINDING SITE FOR RESIDUE ZN A 1752
03
AC3
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:1805
BINDING SITE FOR RESIDUE CA A 1753
04
AC4
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536
BINDING SITE FOR RESIDUE CL A 1754
05
AC5
SOFTWARE
ASN A:76 , GLN A:95 , GLN A:99 , NAG A:1756 , HOH A:2031 , HOH A:2058 , HOH A:2241
BINDING SITE FOR RESIDUE NAG A 1755
06
AC6
SOFTWARE
NAG A:1755 , HOH A:2038 , HOH A:2241
BINDING SITE FOR RESIDUE NAG A 1756
07
AC7
SOFTWARE
ASN A:121 , THR A:123 , HIS A:124 , THR A:349
BINDING SITE FOR RESIDUE NAG A 1757
08
AC8
SOFTWARE
TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , NAG A:1767
BINDING SITE FOR RESIDUE NAG A 1758
09
AC9
SOFTWARE
NAG A:1758
BINDING SITE FOR RESIDUE NAG A 1767
10
BC1
SOFTWARE
ASN A:195 , SER A:197
BINDING SITE FOR RESIDUE NAG A 1759
11
BC2
SOFTWARE
TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:1875 , HOH A:2049 , HOH A:2091 , HOH A:2137 , HOH A:2222
BINDING SITE FOR RESIDUE NAG A 1760
12
BC3
SOFTWARE
SER A:472 , ASN A:476 , NAG A:1762 , HOH A:2055 , HOH A:2297
BINDING SITE FOR RESIDUE NAG A 1761
13
BC4
SOFTWARE
NAG A:1761 , HOH A:2268 , HOH A:2290
BINDING SITE FOR RESIDUE NAG A 1762
14
BC5
SOFTWARE
TYR A:277 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , NAG A:1764 , HOH A:1924 , HOH A:1954 , HOH A:2119
BINDING SITE FOR RESIDUE NAG A 1763
15
BC6
SOFTWARE
GLU A:276 , NAG A:1763 , BMA A:1765
BINDING SITE FOR RESIDUE NAG A 1764
16
BC7
SOFTWARE
HIS A:112 , GLU A:276 , LYS A:324 , ARG A:354 , NAG A:1764 , MAN A:1766 , HOH A:2266
BINDING SITE FOR RESIDUE BMA A 1765
17
BC8
SOFTWARE
PHE A:235 , LYS A:240 , SER A:241 , GLU A:276 , BMA A:1765 , HOH A:1983 , HOH A:2117 , HOH A:2120
BINDING SITE FOR RESIDUE MAN A 1766
18
BC9
SOFTWARE
PHE A:209 , ARG A:210 , ASN A:257 , ASP A:387 , ALA A:424 , GLU A:425 , GLY A:427 , ASP A:453 , SER A:454 , SER A:517 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ZN A:1751 , ZN A:1752 , HOH A:1808 , HOH A:1964 , HOH A:2271 , HOH A:2274 , HOH A:2285
BINDING SITE FOR RESIDUE SDR A 1
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024592 (Y75H, chain A, )
2: VAR_012736 (H475Y, chain A, )
3: VAR_028882 (V627L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024592
Y
75
H
FOLH1_HUMAN
Polymorphism
202676
A
Y
75
H
2
UniProt
VAR_012736
H
475
Y
FOLH1_HUMAN
Polymorphism
61886492
A
H
475
Y
3
UniProt
VAR_028882
V
627
L
FOLH1_HUMAN
Polymorphism
2988342
A
V
627
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (264 KB)
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Biol.Unit 1 (508 KB)
Header - Biol.Unit 1
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