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Getting 'Biological Unit' information from database.
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3SJF
Biol. Unit 1
Info
Asym.Unit (268 KB)
Biol.Unit 1 (519 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HUMAN GLUTAMATE CARBOXYPEPTIDASE II IN COMPLEX WITH A UREA-BASED INHIBITOR (A25)
Authors
:
A. Plechanovova, Y. Byun, G. Alquicer, L. Skultetyova, P. Mlcochova, A H. Kim, M. Navratil, R. Mease, J. Lubkowski, M. Pomper, J. Konvalinka, L. Rulisek, C. Barinka
Date
:
21 Jun 11 (Deposition) - 05 Oct 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Metallopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Plechanovova, Y. Byun, G. Alquicer, L. Skultetyova, P. Mlcochova, A. Nemcova, H. J. Kim, M. Navratil, R. Mease, J. Lubkowski, M. Pomper, J. Konvalinka, L. Rulisek, C. Barinka
Novel Substrate-Based Inhibitors Of Human Glutamate Carboxypeptidase Ii With Enhanced Lipophilicity.
J. Med. Chem. V. 54 7535 2011
[
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
4a: N~2~-{[(1S)-1-CARBOXY-3-(METHYLSUL... (JRGa)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
JRG
2
Ligand/Ion
N~2~-{[(1S)-1-CARBOXY-3-(METHYLSULFANYL)PROPYL]CARBAMOYL}-N~6~-(4-IODOBENZOYL)-L-LYSINE
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:76 , GLN A:95 , GLN A:99 , NAG A:1756 , HOH A:2016 , HOH A:2057
BINDING SITE FOR RESIDUE NAG A 1755
02
AC2
SOFTWARE
NAG A:1755 , HOH A:2026 , HOH A:2471
BINDING SITE FOR RESIDUE NAG A 1756
03
AC3
SOFTWARE
ASN A:121 , THR A:123 , HIS A:124 , THR A:349 , HOH A:2443
BINDING SITE FOR RESIDUE NAG A 1757
04
AC4
SOFTWARE
TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , NAG A:1767
BINDING SITE FOR RESIDUE NAG A 1758
05
AC5
SOFTWARE
NAG A:1758 , HOH A:2447
BINDING SITE FOR RESIDUE NAG A 1767
06
AC6
SOFTWARE
ASN A:195 , HOH A:2474 , HOH A:2493
BINDING SITE FOR RESIDUE NAG A 1759
07
AC7
SOFTWARE
TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:1845 , HOH A:2044 , HOH A:2162 , HOH A:2387
BINDING SITE FOR RESIDUE NAG A 1760
08
AC8
SOFTWARE
SER A:472 , ASN A:476 , PRO A:594 , NAG A:1762 , HOH A:2102
BINDING SITE FOR RESIDUE NAG A 1761
09
AC9
SOFTWARE
GLN A:651 , NAG A:1761 , HOH A:2432 , HOH A:2437 , HOH A:2506
BINDING SITE FOR RESIDUE NAG A 1762
10
BC1
SOFTWARE
GLU A:276 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , NAG A:1764 , HOH A:1894 , HOH A:1928 , HOH A:2133
BINDING SITE FOR RESIDUE NAG A 1763
11
BC2
SOFTWARE
GLU A:276 , NAG A:1763 , BMA A:1765 , HOH A:2061
BINDING SITE FOR RESIDUE NAG A 1764
12
BC3
SOFTWARE
HIS A:112 , GLU A:276 , ARG A:354 , NAG A:1764 , MAN A:1766 , HOH A:2375 , HOH A:2376
BINDING SITE FOR RESIDUE BMA A 1765
13
BC4
SOFTWARE
PHE A:235 , LYS A:240 , SER A:241 , GLU A:276 , BMA A:1765 , HOH A:1959 , HOH A:2131 , HOH A:2134 , HOH A:2362
BINDING SITE FOR RESIDUE MAN A 1766
14
BC5
SOFTWARE
JRG A:1 , ASP A:387 , GLU A:425 , HIS A:553 , ZN A:1752 , HOH A:2476
BINDING SITE FOR RESIDUE ZN A 1751
15
BC6
SOFTWARE
HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , ASP A:453 , ZN A:1751 , HOH A:2476
BINDING SITE FOR RESIDUE ZN A 1752
16
BC7
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:1773
BINDING SITE FOR RESIDUE CA A 1753
17
BC8
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536
BINDING SITE FOR RESIDUE CL A 1754
18
BC9
SOFTWARE
ARG A:210 , ASN A:257 , GLU A:424 , GLU A:425 , GLY A:427 , ARG A:463 , ASP A:465 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ZN A:1751 , HOH A:1776 , HOH A:2476 , HOH A:2477 , HOH A:2478 , HOH A:2501
BINDING SITE FOR RESIDUE JRG A 1
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024592 (Y75H, chain A, )
2: VAR_012736 (H475Y, chain A, )
3: VAR_028882 (V627L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024592
Y
75
H
FOLH1_HUMAN
Polymorphism
202676
A
Y
75
H
2
UniProt
VAR_012736
H
475
Y
FOLH1_HUMAN
Polymorphism
61886492
A
H
475
Y
3
UniProt
VAR_028882
V
627
L
FOLH1_HUMAN
Polymorphism
2988342
A
V
627
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (268 KB)
Header - Asym.Unit
Biol.Unit 1 (519 KB)
Header - Biol.Unit 1
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