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3SIO
Biol. Unit 2
Info
Asym.Unit (417 KB)
Biol.Unit 1 (205 KB)
Biol.Unit 2 (205 KB)
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(1)
Title
:
AC-ACHBP LIGAND BINDING DOMAIN (NOT INCLUDING BETA 9-10 LINKER) MUTATED TO HUMAN ALPHA-7 NACHR
Authors
:
A. Nemecz, P. W. Taylor
Date
:
19 Jun 11 (Deposition) - 26 Oct 11 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.32
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Mutated Acetylcholine Binding Protein, Aplysia Californica, Alpha-7 Human Nicotinic Acetylcholine Receptor, Achbp, Nachr, Binding Protein, Acetylcholine, Glycosylation, Receptor, Methyllycaconitine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Nemecz, P. Taylor
Creating An Alpha-7 Nicotinic Acetylcholine Recognition Domain From The Acetylcholine Binding Protein: Crystallographic And Ligand Selectivity Analyses
J. Biol. Chem. V. 286 42555 2011
[
close entry info
]
Hetero Components
(6, 28)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
3a: METHYLLYCACONITINE (MLKa)
3b: METHYLLYCACONITINE (MLKb)
3c: METHYLLYCACONITINE (MLKc)
3d: METHYLLYCACONITINE (MLKd)
3e: METHYLLYCACONITINE (MLKe)
3f: METHYLLYCACONITINE (MLKf)
3g: METHYLLYCACONITINE (MLKg)
3h: METHYLLYCACONITINE (MLKh)
3i: METHYLLYCACONITINE (MLKi)
3j: METHYLLYCACONITINE (MLKj)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
5b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
5c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
5d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
5e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
5f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
5g: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDg)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
3
MLK
5
Ligand/Ion
METHYLLYCACONITINE
4
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
MRD
3
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
6
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: CC5 (SOFTWARE)
02: CC6 (SOFTWARE)
03: CC7 (SOFTWARE)
04: CC9 (SOFTWARE)
05: DC1 (SOFTWARE)
06: DC2 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: DC7 (SOFTWARE)
11: DC8 (SOFTWARE)
12: DC9 (SOFTWARE)
13: EC1 (SOFTWARE)
14: EC2 (SOFTWARE)
15: EC3 (SOFTWARE)
16: EC4 (SOFTWARE)
17: EC5 (SOFTWARE)
18: EC6 (SOFTWARE)
19: EC7 (SOFTWARE)
20: EC8 (SOFTWARE)
21: EC9 (SOFTWARE)
22: FC1 (SOFTWARE)
23: FC2 (SOFTWARE)
24: FC3 (SOFTWARE)
25: FC4 (SOFTWARE)
26: FC5 (SOFTWARE)
27: FC6 (SOFTWARE)
28: FC7 (SOFTWARE)
29: FC8 (SOFTWARE)
30: FC9 (SOFTWARE)
31: GC1 (SOFTWARE)
32: GC2 (SOFTWARE)
33: GC3 (SOFTWARE)
34: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC5
SOFTWARE
ASN E:110 , SER E:111 , SER E:112 , HIS E:114 , NAG E:226 , HOH E:309 , ARG H:205
BINDING SITE FOR RESIDUE NAG E 225
02
CC6
SOFTWARE
NAG E:225 , BMA E:227 , HOH E:439 , LYS H:203
BINDING SITE FOR RESIDUE NAG E 226
03
CC7
SOFTWARE
NAG E:226 , MAN E:228 , MAN E:230 , MAN E:231 , LYS H:203
BINDING SITE FOR RESIDUE BMA E 227
04
CC9
SOFTWARE
BMA E:227 , MAN E:228 , THR H:180 , HOH H:427
BINDING SITE FOR RESIDUE MAN E 230
05
DC1
SOFTWARE
BMA E:227 , GLU H:136 , THR H:139 , LYS H:203
BINDING SITE FOR RESIDUE MAN E 231
06
DC2
SOFTWARE
ASN E:74 , ALA H:209 , GLY H:210 , ASN H:211
BINDING SITE FOR RESIDUE NAG E 240
07
DC4
SOFTWARE
ASN F:110 , SER F:112 , HIS F:114
BINDING SITE FOR RESIDUE NAG F 225
08
DC5
SOFTWARE
TYR F:93 , LYS F:143 , TRP F:147 , TYR F:149 , TYR F:188 , CYS F:190 , TYR F:195 , ASP F:197 , HOH F:394 , TRP J:55 , GLN J:116 , LEU J:118 , SER J:167
BINDING SITE FOR RESIDUE MLK F 260
09
DC6
SOFTWARE
ASN G:110 , SER G:111 , SER G:112 , HIS G:114 , NAG G:226
BINDING SITE FOR RESIDUE NAG G 225
10
DC7
SOFTWARE
HIS G:114 , NAG G:225
BINDING SITE FOR RESIDUE NAG G 226
11
DC8
SOFTWARE
ASN G:74 , NAG G:241
BINDING SITE FOR RESIDUE NAG G 240
12
DC9
SOFTWARE
NAG G:240 , BMA G:242 , MAN G:246
BINDING SITE FOR RESIDUE NAG G 241
13
EC1
SOFTWARE
NAG G:241 , MAN G:243 , MAN G:246 , LYS H:25
BINDING SITE FOR RESIDUE BMA G 242
14
EC2
SOFTWARE
LYS G:-1 , ASP G:-5 , BMA G:242 , MAN G:244 , MAN G:245
BINDING SITE FOR RESIDUE MAN G 243
15
EC3
SOFTWARE
MAN G:243 , THR H:30
BINDING SITE FOR RESIDUE MAN G 244
16
EC4
SOFTWARE
ASP G:-5 , MAN G:243
BINDING SITE FOR RESIDUE MAN G 245
17
EC5
SOFTWARE
NAG G:241 , BMA G:242 , LYS H:25 , ASP H:26
BINDING SITE FOR RESIDUE MAN G 246
18
EC6
SOFTWARE
SER F:81 , PRO G:21 , TRP G:86 , TYR G:149
BINDING SITE FOR RESIDUE MRD G 250
19
EC7
SOFTWARE
TRP F:55 , GLN F:116 , LEU F:118 , SER F:167 , TYR G:93 , LYS G:143 , SER G:146 , TRP G:147 , SER G:148 , TYR G:149 , GLN G:186 , TYR G:188 , CYS G:190 , TYR G:195 , ASP G:197 , HOH G:333
BINDING SITE FOR RESIDUE MLK G 260
20
EC8
SOFTWARE
ASN H:110 , SER H:111 , SER H:112 , HIS H:114 , HOH H:428
BINDING SITE FOR RESIDUE NAG H 225
21
EC9
SOFTWARE
ASN G:106 , TRP H:86 , TYR H:149
BINDING SITE FOR RESIDUE MRD H 250
22
FC1
SOFTWARE
TRP G:55 , GLN G:116 , LEU G:118 , SER G:167 , TYR H:93 , LYS H:143 , TRP H:147 , SER H:148 , TYR H:149 , GLN H:186 , TYR H:188 , CYS H:190 , TYR H:195 , ASP H:197 , HOH H:334 , HOH H:363
BINDING SITE FOR RESIDUE MLK H 260
23
FC2
SOFTWARE
ASN I:110 , SER I:111 , SER I:112 , HIS I:114
BINDING SITE FOR RESIDUE NAG I 225
24
FC3
SOFTWARE
ASN H:106 , PRO I:21 , TRP I:86 , TYR I:149 , HOH I:391
BINDING SITE FOR RESIDUE MPD I 250
25
FC4
SOFTWARE
TRP H:55 , GLN H:116 , SER H:167 , TYR I:93 , LYS I:143 , TRP I:147 , TYR I:149 , GLN I:186 , TYR I:188 , TYR I:195 , ASP I:197 , HOH I:312
BINDING SITE FOR RESIDUE MLK I 260
26
FC5
SOFTWARE
SER I:81 , ASN I:106 , PRO J:21 , TRP J:86 , TYR J:149
BINDING SITE FOR RESIDUE MRD I 222
27
FC6
SOFTWARE
ARG C:205 , ASN J:110 , SER J:111 , SER J:112 , HIS J:114 , GLN J:116 , NAG J:226
BINDING SITE FOR RESIDUE NAG J 225
28
FC7
SOFTWARE
NAG J:225 , BMA J:227 , MAN J:228
BINDING SITE FOR RESIDUE NAG J 226
29
FC8
SOFTWARE
LYS C:203 , NAG J:226 , MAN J:228 , MAN J:230 , MAN J:231
BINDING SITE FOR RESIDUE BMA J 227
30
FC9
SOFTWARE
NAG J:226 , BMA J:227 , MAN J:230
BINDING SITE FOR RESIDUE MAN J 228
31
GC1
SOFTWARE
THR C:180 , VAL C:201 , LYS C:203 , HOH C:412 , BMA J:227 , MAN J:228
BINDING SITE FOR RESIDUE MAN J 230
32
GC2
SOFTWARE
GLU C:136 , BMA J:227
BINDING SITE FOR RESIDUE MAN J 231
33
GC3
SOFTWARE
ALA C:209 , ASN C:211 , ASN J:74 , HOH J:431
BINDING SITE FOR RESIDUE NAG J 240
34
GC4
SOFTWARE
TRP I:55 , LEU I:118 , SER I:167 , TYR J:93 , LYS J:143 , TRP J:147 , GLN J:186 , TYR J:188 , CYS J:190 , TYR J:195 , ASP J:197 , HOH J:437
BINDING SITE FOR RESIDUE MLK J 260
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d3sioa_ (A:)
1b: SCOP_d3siob_ (B:)
1c: SCOP_d3sioc_ (C:)
1d: SCOP_d3siod_ (D:)
1e: SCOP_d3sioe_ (E:)
1f: SCOP_d3siof_ (F:)
1g: SCOP_d3siog_ (G:)
1h: SCOP_d3sioh_ (H:)
1i: SCOP_d3sioi_ (I:)
1j: SCOP_d3sioj_ (J:)
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Classes
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)
(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
California sea hare (Aplysia californica) [TaxId: 6500]
(36)
1a
d3sioa_
A:
1b
d3siob_
B:
1c
d3sioc_
C:
1d
d3siod_
D:
1e
d3sioe_
E:
1f
d3siof_
F:
1g
d3siog_
G:
1h
d3sioh_
H:
1i
d3sioi_
I:
1j
d3sioj_
J:
[
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]
CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (417 KB)
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