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3SI7
Asym. Unit
Info
Asym.Unit (370 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (93 KB)
Biol.Unit 4 (93 KB)
Biol.Unit 5 (720 KB)
Biol.Unit 6 (710 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE NBD1 DOMAIN OF THE MOUSE CFTR PROTEIN, DELTAF508 MUTANT
Authors
:
C. A. Brautigam, E. Caspa, P. J. Thomas
Date
:
17 Jun 11 (Deposition) - 01 Feb 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (4x)
Biol. Unit 6: C,D (4x)
Keywords
:
Cystic Fibrosis, Atp-Binding Domain, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Mendoza, A. Schmidt, Q. Li, E. Nuvaga, T. Barrett, R. J. Bridges, A. P. Feranchak, C. A. Brautigam, P. J. Thomas
Requirements For Efficient Correction Of Deltaf508 Cftr Revealed By Analyses Of Evolved Sequences
Cell(Cambridge, Mass. ) V. 148 164 2012
[
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
2d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
MG
8
Ligand/Ion
MAGNESIUM ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MG A:2 , HOH A:165 , TRP A:401 , GLU A:410 , GLN A:413 , PHE A:430 , THR A:460 , GLY A:461 , SER A:462 , GLY A:463 , LYS A:464 , THR A:465 , SER A:466
BINDING SITE FOR RESIDUE ATP A 1
02
AC2
SOFTWARE
ATP A:1 , HOH A:165 , GLN A:413 , THR A:465 , GLN A:493
BINDING SITE FOR RESIDUE MG A 2
03
AC3
SOFTWARE
HOH A:123 , HOH A:166 , HOH A:167 , GLY A:451 , ALA A:596
BINDING SITE FOR RESIDUE MG A 3
04
AC4
SOFTWARE
HOH A:105 , LEU A:541 , GLY A:542 , GLY A:545 , VAL A:546 , THR A:547
BINDING SITE FOR RESIDUE ACT A 4
05
AC5
SOFTWARE
HOH A:113 , LYS A:532 , SER A:549 , GLN A:552 , HOH B:112 , LYS B:532 , GLN B:552
BINDING SITE FOR RESIDUE ACT A 5
06
AC6
SOFTWARE
GLU A:543 , MG B:2 , HOH B:126 , TRP B:401 , GLN B:413 , THR B:460 , GLY B:461 , SER B:462 , GLY B:463 , LYS B:464 , THR B:465 , SER B:466 , GLN B:493
BINDING SITE FOR RESIDUE ATP B 1
07
AC7
SOFTWARE
ATP B:1 , HOH B:126 , GLN B:413 , THR B:465 , GLN B:493
BINDING SITE FOR RESIDUE MG B 2
08
AC8
SOFTWARE
HOH B:125 , GLY B:451 , ALA B:596
BINDING SITE FOR RESIDUE MG B 3
09
AC9
SOFTWARE
LEU A:578 , HOH B:111 , GLY B:542 , GLY B:545 , VAL B:546 , THR B:547
BINDING SITE FOR RESIDUE ACT B 4
10
BC1
SOFTWARE
MG C:2 , HOH C:174 , TRP C:401 , GLN C:413 , THR C:460 , GLY C:461 , SER C:462 , GLY C:463 , LYS C:464 , THR C:465 , SER C:466 , GLN C:493
BINDING SITE FOR RESIDUE ATP C 1
11
BC2
SOFTWARE
ATP C:1 , HOH C:174 , GLN C:413 , THR C:465 , GLN C:493
BINDING SITE FOR RESIDUE MG C 2
12
BC3
SOFTWARE
HOH C:115 , HOH C:134 , GLY C:451 , ALA C:596
BINDING SITE FOR RESIDUE MG C 3
13
BC4
SOFTWARE
HOH C:114 , LEU C:541 , GLY C:542 , GLY C:545 , VAL C:546 , THR C:547 , LEU D:578
BINDING SITE FOR RESIDUE ACT C 4
14
BC5
SOFTWARE
HOH C:172 , GLU C:543
BINDING SITE FOR RESIDUE ACT C 5
15
BC6
SOFTWARE
MG D:2 , HOH D:127 , TRP D:401 , LEU D:409 , THR D:460 , GLY D:461 , SER D:462 , GLY D:463 , LYS D:464 , THR D:465 , SER D:466 , GLN D:493 , PRO D:499
BINDING SITE FOR RESIDUE ATP D 1
16
BC7
SOFTWARE
ATP D:1 , HOH D:127 , HOH D:168 , THR D:465 , GLN D:493
BINDING SITE FOR RESIDUE MG D 2
17
BC8
SOFTWARE
HOH D:125 , HOH D:126 , HOH D:135 , GLY D:451 , ALA D:596
BINDING SITE FOR RESIDUE MG D 3
18
BC9
SOFTWARE
HOH D:115 , LEU D:541 , GLY D:542 , GLY D:545 , VAL D:546 , THR D:547
BINDING SITE FOR RESIDUE ACT D 4
19
CC1
SOFTWARE
HOH C:116 , LYS C:532 , GLN C:552 , LYS D:532 , GLN D:552
BINDING SITE FOR RESIDUE ACT D 5
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (A:548-562,B:548-562,C:548-562,D:54...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
CFTR_MOUSE
548-562
4
A:548-562
B:548-562
C:548-562
D:548-562
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3si7a_ (A:)
1b: SCOP_d3si7b_ (B:)
1c: SCOP_d3si7c_ (C:)
1d: SCOP_d3si7d_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
(17)
Mouse (Mus musculus) [TaxId: 10090]
(9)
1a
d3si7a_
A:
1b
d3si7b_
B:
1c
d3si7c_
C:
1d
d3si7d_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (370 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Biol.Unit 2 (95 KB)
Header - Biol.Unit 2
Biol.Unit 3 (93 KB)
Header - Biol.Unit 3
Biol.Unit 4 (93 KB)
Header - Biol.Unit 4
Biol.Unit 5 (720 KB)
Header - Biol.Unit 5
Biol.Unit 6 (710 KB)
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