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Getting 'Biological Unit' information from database.
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3SG5
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (260 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIMERIC GCAMP3-D380Y, QP(LINKER 1), LP(LINKER 2)
Authors
:
E. R. Schreiter, J. Akerboom, L. L. Looger
Date
:
14 Jun 11 (Deposition) - 20 Jun 12 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Calcium Sensor, Fluorescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Akerboom, T. W. Chen, T. J. Wardill, L. Tian, J. S. Marvin, S. Mutlu, N. C. Calderon, F. Esposti, B. G. Borghuis, X. R. Sun, A. Gordus, M. B. Orger, R. Portugues, F. Engert, J. J. Macklin, A. Filosa, A. Aggarwal, R. A. Kerr, R. Takagi, S. Kracun, E. Shigetomi, B. S. Khakh H. Baier, L. Lagnado, S. S. Wang, C. I. Bargmann, B. E. Kimmel, V. Jayaraman, K. Svoboda, D. S. Kim, E. R. Schreiter, L. L. Looger
Optimization Of A Gcamp Calcium Indicator For Neural Activity Imaging.
J. Neurosci. V. 32 13819 2012
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROa)
3a: GLYCEROL (GOLa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CRO
1
Mod. Amino Acid
{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
3
GOL
1
Ligand/Ion
GLYCEROL
4
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:431 , ASP A:433 , ASP A:435 , GLN A:437 , GLU A:442 , HOH A:472
BINDING SITE FOR RESIDUE CA A 451
2
AC2
SOFTWARE
ASP A:322 , ASP A:324 , ASP A:326 , THR A:328 , GLU A:333 , HOH A:495
BINDING SITE FOR RESIDUE CA A 452
3
AC3
SOFTWARE
ASP A:395 , ASP A:397 , ASN A:399 , TYR A:401 , GLU A:406 , HOH A:479
BINDING SITE FOR RESIDUE CA A 453
4
AC4
SOFTWARE
ASP A:358 , ASP A:360 , ASP A:362 , THR A:364 , GLU A:369 , HOH A:494
BINDING SITE FOR RESIDUE CA A 454
5
AC5
SOFTWARE
PRO A:213 , TRP A:214 , HIS A:296 , TYR A:300 , HOH A:466 , HOH A:522
BINDING SITE FOR RESIDUE SO4 A 455
6
AC6
SOFTWARE
LYS A:118 , THR A:307 , GLU A:308
BINDING SITE FOR RESIDUE SO4 A 456
7
AC7
SOFTWARE
LYS A:74 , ARG A:408 , HIS A:409 , SO4 A:458
BINDING SITE FOR RESIDUE SO4 A 457
8
AC8
SOFTWARE
LYS A:65 , LYS A:74 , ASN A:76 , TYR A:94 , ARG A:408 , SO4 A:457 , GOL A:459
BINDING SITE FOR RESIDUE SO4 A 458
9
AC9
SOFTWARE
TYR A:94 , THR A:254 , PHE A:256 , ARG A:408 , ASP A:424 , SO4 A:458
BINDING SITE FOR RESIDUE GOL A 459
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GFP_AEQVI_001 (F257Y, chain A, )
2: VAR_GFP_AEQVI_002 (T265S, chain A, )
3: VAR_GFP_AEQVI_003 (L298M, chain A, )
4: VAR_GFP_AEQVI_004 (T412I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
A
F
257
Y
2
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
A
T
265
S
3
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
A
L
298
M
4
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
A
T
412
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:309-344|A:345-375|A:382-417|A:41...)
2: EF_HAND_1 (A:322-334|A:358-370|A:395-407|A:43...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_RAT
8-43
44-79
81-116
117-149
4
A:309-344
A:345-375
A:382-417
A:418-448
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_RAT
21-33
57-69
94-106
130-142
4
A:322-334
A:358-370
A:395-407
A:431-443
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (140 KB)
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