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3SFG
Asym. Unit
Info
Asym.Unit (262 KB)
Biol.Unit 1 (172 KB)
Biol.Unit 2 (169 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURINE NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH 2THIOURIDINE(2TU)
Authors
:
K. H. Kim, I. Alam
Date
:
13 Jun 11 (Deposition) - 09 May 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.21
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Right Hand Conformation, Polymerase, Rna Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Alam, J. H. Lee, K. J. Cho, K. R. Han, J. M. Yang, M. S. Chung, K. H. Kim
Crystal Structures Of Murine Norovirus-1 Rna-Dependent Rna Polymerase In Complex With 2-Thiouridine Or Ribavirin.
Virology V. 426 143 2012
[
close entry info
]
Hetero Components
(4, 59)
Info
All Hetero Components
1a: 1-(BETA-D-RIBOFURANOSYL)-2-THIOXO-... (2TUa)
1b: 1-(BETA-D-RIBOFURANOSYL)-2-THIOXO-... (2TUb)
1c: 1-(BETA-D-RIBOFURANOSYL)-2-THIOXO-... (2TUc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2TU
3
Ligand/Ion
1-(BETA-D-RIBOFURANOSYL)-2-THIOXO-2,3-DIHYDROPYRIMIDIN-4(1H)-ONE
2
GOL
25
Ligand/Ion
GLYCEROL
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
SO4
28
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(59, 59)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:250 , LEU A:301 , SER A:303 , THR A:308 , THR A:309 , ASN A:312 , TYR A:344 , ASP A:346
BINDING SITE FOR RESIDUE 2TU A 601
02
AC2
SOFTWARE
TYR A:246 , THR A:247 , ARG A:248
BINDING SITE FOR RESIDUE SO4 A 602
03
AC3
SOFTWARE
THR A:148 , HIS A:149 , ASN A:152 , HOH A:745
BINDING SITE FOR RESIDUE SO4 A 603
04
AC4
SOFTWARE
TRP A:134 , GLY A:136
BINDING SITE FOR RESIDUE SO4 A 604
05
AC5
SOFTWARE
ARG A:374 , GLU A:383 , ARG A:385
BINDING SITE FOR RESIDUE SO4 A 605
06
AC6
SOFTWARE
PRO A:103 , ARG A:486
BINDING SITE FOR RESIDUE SO4 A 606
07
AC7
SOFTWARE
PRO A:82 , GLN A:83 , GLU A:84
BINDING SITE FOR RESIDUE SO4 A 607
08
AC8
SOFTWARE
CYS A:90 , ASP A:91 , GLU A:94 , ARG A:260 , ILE A:264 , HOH A:718 , HOH A:817
BINDING SITE FOR RESIDUE SO4 A 608
09
AC9
SOFTWARE
MET A:31 , LEU A:168 , LYS A:169 , ASP A:170 , LEU A:187
BINDING SITE FOR RESIDUE SO4 A 609
10
BC1
SOFTWARE
ASP A:410 , ARG A:411
BINDING SITE FOR RESIDUE SO4 A 610
11
BC2
SOFTWARE
SER A:27 , THR A:28 , LYS A:29 , ASN A:425 , HOH A:878
BINDING SITE FOR RESIDUE GOL A 611
12
BC3
SOFTWARE
ASP A:117 , THR A:120 , SER A:121 , LYS A:130 , MET A:195 , HOH A:734
BINDING SITE FOR RESIDUE GOL A 612
13
BC4
SOFTWARE
LEU A:5 , SER A:9 , GLY A:10 , THR A:11 , TYR A:12 , ALA A:13 , ARG A:67 , HOH A:876
BINDING SITE FOR RESIDUE GOL A 613
14
BC5
SOFTWARE
SER A:223 , MET A:224 , ASN A:225
BINDING SITE FOR RESIDUE GOL A 614
15
BC6
SOFTWARE
THR A:28 , GLY A:51 , SER A:52 , PRO A:60 , SER A:61 , LEU A:62 , HOH A:897
BINDING SITE FOR RESIDUE GOL A 615
16
BC7
SOFTWARE
LYS A:158 , SER A:159 , HOH A:850 , HOH A:910
BINDING SITE FOR RESIDUE GOL A 616
17
BC8
SOFTWARE
PHE A:109 , CYS A:113 , SER A:137 , ALA A:138 , PHE A:139
BINDING SITE FOR RESIDUE GOL A 617
18
BC9
SOFTWARE
ARG A:234 , ASN A:237 , GLU A:340 , ASP A:401 , GLN A:402 , GLY A:404 , HOH A:896
BINDING SITE FOR RESIDUE GOL A 618
19
CC1
SOFTWARE
PRO A:24 , SER A:121 , GLY A:123 , HIS A:127 , THR A:165
BINDING SITE FOR RESIDUE GOL A 619
20
CC2
SOFTWARE
LYS A:29 , ASN A:425 , HIS A:426 , GLN A:427 , LYS C:158
BINDING SITE FOR RESIDUE GOL A 620
21
CC3
SOFTWARE
ARG A:7 , SER A:9 , ALA A:18 , TYR A:20 , TYR A:293
BINDING SITE FOR RESIDUE GOL A 621
22
CC4
SOFTWARE
ARG A:384 , GLN A:386
BINDING SITE FOR RESIDUE GOL A 622
23
CC5
SOFTWARE
ASP A:243 , ASP A:347 , GLU A:348 , SER A:392 , HOH A:756
BINDING SITE FOR RESIDUE MG A 623
24
CC6
SOFTWARE
THR B:309 , ASN B:312 , TYR B:344 , GLY B:345 , ASP B:346 , HOH B:821
BINDING SITE FOR RESIDUE 2TU B 601
25
CC7
SOFTWARE
HIS B:149 , ASN B:152
BINDING SITE FOR RESIDUE SO4 B 602
26
CC8
SOFTWARE
GLN B:83 , HOH B:763
BINDING SITE FOR RESIDUE SO4 B 603
27
CC9
SOFTWARE
ILE A:334 , ARG B:329
BINDING SITE FOR RESIDUE SO4 B 604
28
DC1
SOFTWARE
ASP B:410 , ARG B:411 , HIS B:453 , HOH B:867
BINDING SITE FOR RESIDUE SO4 B 605
29
DC2
SOFTWARE
LYS A:158 , LYS B:29 , HIS B:426 , GLN B:427 , GLU B:431
BINDING SITE FOR RESIDUE SO4 B 606
30
DC3
SOFTWARE
CYS B:90 , ASP B:91 , GLU B:94 , ARG B:260 , ASP B:263 , ILE B:264 , ARG B:267
BINDING SITE FOR RESIDUE SO4 B 607
31
DC4
SOFTWARE
SER B:223 , MET B:224 , ASN B:225
BINDING SITE FOR RESIDUE SO4 B 608
32
DC5
SOFTWARE
ARG B:385 , GLN B:386 , THR B:387
BINDING SITE FOR RESIDUE SO4 B 609
33
DC6
SOFTWARE
ASP B:117 , THR B:120 , LYS B:130 , MET B:195
BINDING SITE FOR RESIDUE GOL B 610
34
DC7
SOFTWARE
THR B:28 , SER B:52 , SER B:61 , LEU B:62 , GLN B:63 , HOH B:833
BINDING SITE FOR RESIDUE GOL B 611
35
DC8
SOFTWARE
GLY B:157 , LYS B:158 , SER B:159
BINDING SITE FOR RESIDUE GOL B 612
36
DC9
SOFTWARE
PHE B:109 , LYS B:110 , CYS B:113 , ALA B:138 , PHE B:139
BINDING SITE FOR RESIDUE GOL B 613
37
EC1
SOFTWARE
SER B:121 , GLY B:123 , HIS B:127 , THR B:165 , GLY B:189 , SER B:190
BINDING SITE FOR RESIDUE GOL B 614
38
EC2
SOFTWARE
ASN B:237 , PHE B:238 , ARG B:239 , ALA C:236 , ASN C:237 , PHE C:238
BINDING SITE FOR RESIDUE GOL B 615
39
EC3
SOFTWARE
THR B:108 , PHE B:109 , LYS B:110 , ASN B:151 , GLU B:155 , ARG B:200
BINDING SITE FOR RESIDUE GOL B 616
40
EC4
SOFTWARE
ASP B:243 , ASP B:245 , ASP B:346 , ASP B:347 , GLU B:348 , HOH B:865
BINDING SITE FOR RESIDUE MG B 617
41
EC5
SOFTWARE
ASP C:250 , SER C:303 , THR C:308 , THR C:309 , ASN C:312 , GLY C:345 , ASP C:346 , HOH C:846
BINDING SITE FOR RESIDUE 2TU C 601
42
EC6
SOFTWARE
TYR C:246 , THR C:247 , ARG C:248 , HOH C:721
BINDING SITE FOR RESIDUE SO4 C 602
43
EC7
SOFTWARE
HIS C:149 , ASN C:152
BINDING SITE FOR RESIDUE SO4 C 603
44
EC8
SOFTWARE
ARG C:374 , GLU C:383 , ARG C:385
BINDING SITE FOR RESIDUE SO4 C 604
45
EC9
SOFTWARE
GLY C:454 , GLU C:455 , LYS C:456
BINDING SITE FOR RESIDUE SO4 C 605
46
FC1
SOFTWARE
THR C:11 , TYR C:12 , ALA C:13
BINDING SITE FOR RESIDUE SO4 C 606
47
FC2
SOFTWARE
ASN C:95 , ASN C:99
BINDING SITE FOR RESIDUE SO4 C 607
48
FC3
SOFTWARE
TRP C:134 , GLY C:136
BINDING SITE FOR RESIDUE SO4 C 608
49
FC4
SOFTWARE
THR C:28 , GLY C:51 , SER C:52 , SER C:61 , LEU C:62 , HOH C:789
BINDING SITE FOR RESIDUE SO4 C 609
50
FC5
SOFTWARE
LEU C:168 , LYS C:169 , ASP C:170 , LEU C:187
BINDING SITE FOR RESIDUE SO4 C 610
51
FC6
SOFTWARE
ASN B:237 , ASP C:401 , TRP C:405 , HOH C:793
BINDING SITE FOR RESIDUE SO4 C 611
52
FC7
SOFTWARE
ASP C:410 , ARG C:411 , HIS C:453 , HOH C:783
BINDING SITE FOR RESIDUE SO4 C 612
53
FC8
SOFTWARE
PHE C:109 , CYS C:113 , ALA C:138 , PHE C:139
BINDING SITE FOR RESIDUE GOL C 613
54
FC9
SOFTWARE
SER C:27 , LYS C:29 , ASN C:425
BINDING SITE FOR RESIDUE GOL C 614
55
GC1
SOFTWARE
GLY C:157 , LYS C:158 , SER C:159 , HOH C:833
BINDING SITE FOR RESIDUE GOL C 615
56
GC2
SOFTWARE
ARG C:384 , ARG C:385 , GLN C:386
BINDING SITE FOR RESIDUE GOL C 616
57
GC3
SOFTWARE
CYS C:90 , ASP C:91 , GLU C:94 , ARG C:260 , ILE C:264 , ARG C:267
BINDING SITE FOR RESIDUE GOL C 617
58
GC4
SOFTWARE
HIS C:426 , GLN C:427 , ASN C:428 , GLU C:431
BINDING SITE FOR RESIDUE GOL C 618
59
GC5
SOFTWARE
ASP C:243 , ASP C:347 , GLU C:348 , SER C:392 , HOH C:743
BINDING SITE FOR RESIDUE MG C 619
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3sfga_ (A:)
1b: SCOP_d3sfgb_ (B:)
1c: SCOP_d3sfgc_ (C:)
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3sfga_
A:
1b
d3sfgb_
B:
1c
d3sfgc_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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