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3SF6
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (500 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUTARYL-COA DEHYDROGENASE FROM MYCOBACTERIUM SMEGMATIS
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
12 Jun 11 (Deposition) - 29 Jun 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Ssgcid, Nih, Niaid, Sbri, Uw, Emerald Biostructures, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
5a: UNKNOWN LIGAND (UNLa)
5b: UNKNOWN LIGAND (UNLb)
5c: UNKNOWN LIGAND (UNLc)
5d: UNKNOWN LIGAND (UNLd)
5e: UNKNOWN LIGAND (UNLe)
5f: UNKNOWN LIGAND (UNLf)
5g: UNKNOWN LIGAND (UNLg)
5h: UNKNOWN LIGAND (UNLh)
5i: UNKNOWN LIGAND (UNLi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
FDA
1
Ligand/Ion
DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
4
SO4
3
Ligand/Ion
SULFATE ION
5
UNL
9
Ligand/Ion
UNKNOWN LIGAND
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:144 , LEU A:146 , THR A:147 , GLY A:152 , SER A:153 , TRP A:177 , ILE A:178 , THR A:179 , LEU A:220 , ARG A:283 , GLN A:285 , PHE A:286 , ILE A:290 , PHE A:293 , GLN A:294 , THR A:351 , VAL A:352 , ALA A:355 , SER A:373 , THR A:376 , TYR A:377 , THR A:380 , GLU A:382 , MET A:383 , PHE A:398 , HOH A:429 , HOH A:431 , HOH A:439 , HOH A:446 , HOH A:449 , HOH A:684
BINDING SITE FOR RESIDUE FDA A 400
2
AC2
SOFTWARE
THR A:36 , GLY A:71 , HOH A:420 , HOH A:571
BINDING SITE FOR RESIDUE EDO A 410
3
AC3
SOFTWARE
ARG A:192 , GLY A:196 , ILE A:197 , SER A:246 , LEU A:247 , HOH A:668 , HOH A:681
BINDING SITE FOR RESIDUE SO4 A 411
4
AC4
SOFTWARE
TYR A:90 , VAL A:108 , GLY A:112 , SER A:113 , HOH A:471
BINDING SITE FOR RESIDUE CL A 412
5
AC5
SOFTWARE
ASP A:17 , ILE A:22 , ARG A:34 , GLU A:96 , ARG A:270 , TYR A:307 , HOH A:529
BINDING SITE FOR RESIDUE EDO A 413
6
AC6
SOFTWARE
GLY A:173 , THR A:174 , LEU A:230 , ASP A:231 , HOH A:649
BINDING SITE FOR RESIDUE EDO A 414
7
AC7
SOFTWARE
GLU A:54 , LYS A:215 , SER A:216 , ARG A:221 , HOH A:555 , HOH A:711
BINDING SITE FOR RESIDUE SO4 A 415
8
AC8
SOFTWARE
GLY A:396 , ALA A:397 , PHE A:398 , ARG A:399
BINDING SITE FOR RESIDUE CL A 416
9
AC9
SOFTWARE
SER A:27 , ALA A:28 , ARG A:31 , ARG A:234 , HOH A:428 , HOH A:541 , HOH A:638
BINDING SITE FOR RESIDUE SO4 A 417
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3sf6a2 (A:247-399)
2a: SCOP_d3sf6a1 (A:13-246)
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Classes
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Mycobacterium smegmatis [TaxId: 246196]
(3)
1a
d3sf6a2
A:247-399
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Mycobacterium smegmatis [TaxId: 246196]
(3)
2a
d3sf6a1
A:13-246
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Acyl_CoA_dh_1_3sf6A01 (A:247-393)
2a: PFAM_Acyl_CoA_dh_M_3sf6A02 (A:143-195)
3a: PFAM_Acyl_CoA_dh_N_3sf6A03 (A:27-139)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Acyl-CoA_dh
(32)
Family
:
Acyl-CoA_dh_1
(24)
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
(3)
1a
Acyl-CoA_dh_1-3sf6A01
A:247-393
Clan
:
no clan defined [family: Acyl-CoA_dh_M]
(24)
Family
:
Acyl-CoA_dh_M
(24)
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
(3)
2a
Acyl-CoA_dh_M-3sf6A02
A:143-195
Clan
:
no clan defined [family: Acyl-CoA_dh_N]
(23)
Family
:
Acyl-CoA_dh_N
(23)
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
(3)
3a
Acyl-CoA_dh_N-3sf6A03
A:27-139
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Chain A
Asymmetric Unit 1
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